Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.9e-49 199.5 126 100.0
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.0e-43 177.9 126 73.8
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 6.0e-35 151.4 87 81.6
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.0e-34 150.6 84 82.1
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.4e-31 139.4 87 73.6
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 8.7e-26 120.9 83 62.7
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.1e-24 114.4 80 61.2
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-23 114.0 83 60.2
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.4e-23 113.6 83 65.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.8e-23 113.2 99 52.5
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.1e-23 112.5 83 63.9
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.1e-23 112.5 82 63.4
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.0e-23 112.1 83 60.2
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 5.3e-23 111.7 83 54.2
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 5.3e-23 111.7 79 62.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 6.9e-23 111.3 83 62.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 9.0e-23 110.9 79 63.3
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 9.0e-23 110.9 83 60.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 9.0e-23 110.9 83 61.4
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.2e-22 110.5 83 59.0
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.2e-22 110.5 83 59.0
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.2e-22 110.5 83 61.4
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.2e-22 110.5 81 61.7
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.5e-22 110.2 83 57.8
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.5e-22 110.2 83 57.8
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.5e-22 110.2 83 60.2
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.0e-22 109.8 82 59.8
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.6e-22 109.4 83 57.8
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.6e-22 109.4 79 59.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 3.4e-22 109.0 80 60.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 4.5e-22 108.6 84 57.1
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 5.8e-22 108.2 79 59.5
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 5.8e-22 108.2 81 59.3
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 5.8e-22 108.2 84 61.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 7.6e-22 107.8 83 62.7
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 7.6e-22 107.8 79 59.5
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.6e-22 107.8 82 58.5
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 7.6e-22 107.8 82 58.5
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 7.6e-22 107.8 84 60.7
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 9.9e-22 107.5 83 57.8
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 9.9e-22 107.5 83 57.8
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 9.9e-22 107.5 80 56.2
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 9.9e-22 107.5 83 57.8
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 9.9e-22 107.5 79 62.0
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 9.9e-22 107.5 84 60.7
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 9.9e-22 107.5 83 61.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.3e-21 107.1 84 57.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.3e-21 107.1 81 58.0
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.3e-21 107.1 79 59.5
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.7e-21 106.7 83 57.8
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.7e-21 106.7 82 57.3
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.7e-21 106.7 83 57.8
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.2e-21 106.3 80 60.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.2e-21 106.3 80 60.0
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.9e-21 105.9 80 60.0
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.9e-21 105.9 79 57.0
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.9e-21 105.9 80 57.5
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.9e-21 105.9 78 57.7
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.8e-21 105.5 79 57.0
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.8e-21 105.5 79 57.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 4.9e-21 105.1 95 51.6
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.9e-21 105.1 95 51.6
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 6.4e-21 104.8 79 57.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 6.4e-21 104.8 79 58.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 8.4e-21 104.4 83 57.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 8.4e-21 104.4 78 59.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 8.4e-21 104.4 83 56.6
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.1e-20 104.0 82 56.1
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.1e-20 104.0 74 60.8
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 2.5e-20 102.8 83 55.4
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.5e-20 102.8 79 59.5
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.5e-20 102.8 95 50.5
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.5e-20 102.8 95 50.5
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 3.2e-20 102.4 85 58.8
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 5.5e-20 101.7 85 58.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 5.5e-20 101.7 85 58.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 5.5e-20 101.7 95 48.4
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 9.3e-20 100.9 84 56.0
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 9.3e-20 100.9 80 56.2
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 9.3e-20 100.9 80 56.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 9.3e-20 100.9 76 56.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.2e-19 100.5 70 61.4
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.2e-19 100.5 80 55.0
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.2e-19 100.5 80 55.0
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.6e-19 100.1 79 54.4
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.6e-19 100.1 82 53.7
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.6e-19 100.1 85 56.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.1e-19 99.8 79 60.8
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 2.7e-19 99.4 85 60.0
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.7e-19 99.4 83 55.4
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 3.5e-19 99.0 84 56.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.6e-19 98.6 80 53.8
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 4.6e-19 98.6 85 60.0
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 4.6e-19 98.6 95 47.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 4.6e-19 98.6 81 60.5
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 6.0e-19 98.2 81 54.3
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 6.0e-19 98.2 84 57.1
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 7.9e-19 97.8 77 61.0
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 7.9e-19 97.8 81 50.6
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.0e-18 97.4 85 52.9
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.0e-18 97.4 84 56.0
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.8e-18 96.7 85 57.6
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.8e-18 96.7 68 60.3
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.8e-18 96.7 68 60.3
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.3e-18 96.3 81 51.9
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.3e-18 96.3 80 52.5
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 5.1e-18 95.1 79 53.2
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.7e-18 94.7 79 51.9
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.1e-17 94.0 82 52.4
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.5e-17 93.6 95 46.3
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.5e-17 93.6 81 49.4
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.5e-17 93.6 81 55.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.5e-17 93.6 79 53.2
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 4.3e-17 92.0 80 53.8
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 9.6e-17 90.9 77 50.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.1e-16 89.7 80 52.5
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.8e-16 89.4 80 51.2
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 4.8e-16 88.6 74 56.8
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 4.8e-16 88.6 84 53.6
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 6.2e-16 88.2 86 50.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.2e-16 87.8 81 55.6
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 8.2e-16 87.8 81 56.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.1e-15 87.4 58 62.1
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.1e-15 87.4 85 49.4
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.4e-15 87.0 79 55.7
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.8e-15 86.7 81 55.6
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.8e-15 86.7 79 53.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.4e-15 86.3 80 52.5
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.1e-15 85.9 85 50.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.2e-14 84.0 78 48.7
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.0e-13 80.9 77 49.4
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.9e-13 78.6 80 48.8
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 6.5e-13 78.2 60 60.0
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.9e-12 76.6 77 48.1
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.9e-12 76.6 70 52.9
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.5e-12 76.3 68 47.1
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.2e-12 75.9 84 47.6
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.2e-12 75.9 84 47.6
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 4.2e-12 75.5 74 54.1
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 4.2e-12 75.5 74 54.1
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.2e-11 73.9 58 55.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.6e-11 73.6 78 46.2
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.5e-06 55.5 43 53.5


User provided reference genes

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