Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.4e-297 1025.8 613 100.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 9.5e-105 385.2 577 52.3
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.9e-89 334.3 581 48.4
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.2e-80 302.8 529 48.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.9e-55 219.5 241 61.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.6e-41 172.6 526 37.1
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 9.6e-41 172.6 563 36.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.1e-40 171.4 610 35.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.1e-39 169.1 558 37.6
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.8e-39 168.3 629 35.0
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 3.8e-37 160.6 635 33.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 6.5e-37 159.8 646 33.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 5.5e-36 156.8 616 34.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 7.2e-36 156.4 623 32.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.2e-36 156.4 636 34.0
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.6e-35 154.1 554 34.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 4.6e-35 153.7 620 32.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.3e-34 152.1 552 35.3
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.3e-34 151.4 501 35.9
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.9e-33 148.3 584 35.1
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.2e-32 144.8 614 33.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.8e-32 144.4 538 35.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.8e-32 144.4 604 33.3
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 3.7e-32 144.1 522 35.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.2e-32 142.9 589 34.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.1e-31 142.5 547 34.6
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.4e-31 142.1 614 35.3
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.4e-31 142.1 627 33.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 6.9e-31 139.8 582 33.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 9.1e-31 139.4 621 32.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.2e-30 139.0 584 33.2
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-30 138.3 644 32.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.4e-30 137.5 540 33.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 7.7e-30 136.3 511 35.2
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.0e-29 136.0 622 33.8
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.2e-29 134.8 618 31.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-29 134.8 618 32.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.8e-29 134.0 618 32.8
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.1e-28 132.5 458 35.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.2e-28 130.6 523 35.6
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.2e-28 130.6 595 33.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.5e-28 130.2 543 35.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 5.5e-28 130.2 546 33.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 5.5e-28 130.2 577 33.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 7.2e-28 129.8 629 33.4
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.2e-27 129.0 402 35.1
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-27 129.0 461 35.6
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.2e-27 129.0 598 32.1
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.6e-27 128.6 417 35.3
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-27 128.3 543 35.5
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-27 128.3 534 36.0
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-27 128.3 534 36.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.7e-27 127.9 572 34.4
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.7e-27 127.9 565 31.7
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.6e-27 127.5 524 33.0
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.0e-26 125.9 531 33.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.0e-26 125.9 461 34.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.0e-26 125.9 582 33.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.0e-26 125.9 633 32.4
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.4e-26 125.6 624 32.4
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.0e-26 124.4 581 31.5
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.0e-26 124.4 634 31.2
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-25 122.5 627 32.1
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.5e-25 122.1 539 33.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.0e-25 121.7 618 32.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.3e-25 120.9 612 32.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 4.4e-25 120.6 495 32.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.4e-25 120.6 651 32.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 5.7e-25 120.2 577 32.9
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 7.4e-25 119.8 485 33.4
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 7.4e-25 119.8 580 31.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.7e-25 119.4 647 31.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-24 118.6 588 33.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.8e-24 117.1 623 31.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.8e-24 117.1 555 32.8
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 6.9e-23 113.2 626 31.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-22 112.5 458 33.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.0e-22 111.7 535 33.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.0e-22 111.7 624 30.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.0e-22 111.7 436 35.1
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.4e-22 110.9 576 31.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.5e-22 110.5 632 31.2
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 4.5e-22 110.5 519 32.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.7e-22 109.8 407 35.6
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 7.7e-22 109.8 567 30.9
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.0e-21 109.4 502 32.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.3e-21 109.0 625 31.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.3e-21 109.0 546 30.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.9e-21 107.8 660 28.6
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.9e-21 107.8 525 30.7
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 3.8e-21 107.5 488 32.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 5.0e-21 107.1 628 30.1
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 5.0e-21 107.1 521 31.7
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 6.5e-21 106.7 646 29.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 6.5e-21 106.7 624 29.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.4e-20 105.5 447 32.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.2e-20 104.0 506 31.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.9e-19 99.8 420 31.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.0e-18 99.4 503 31.8
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.0e-18 99.4 599 30.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.3e-18 98.2 641 29.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.3e-18 98.2 513 31.4
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 3.9e-18 97.4 569 29.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 8.8e-18 96.3 580 30.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 8.8e-18 96.3 663 30.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 8.8e-18 96.3 589 30.4
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.1e-17 95.9 627 31.4
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.0e-17 95.1 607 29.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.4e-17 94.0 548 29.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.4e-17 94.0 516 30.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.4e-17 93.2 567 29.1
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.7e-17 92.8 530 30.6
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.2e-16 91.7 544 30.1
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.8e-16 91.3 418 31.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.3e-16 90.1 652 29.8
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 8.2e-16 89.7 639 29.4
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-15 88.2 492 29.1
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.4e-15 88.2 509 31.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 5.3e-15 87.0 396 32.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.0e-15 86.7 539 29.3
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.2e-14 85.9 272 36.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 5.9e-14 83.6 468 29.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 7.7e-14 83.2 358 30.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 7.7e-14 83.2 358 31.0
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.7e-13 82.0 527 29.6
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.8e-13 80.9 530 28.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.1e-12 79.3 252 34.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.5e-12 79.0 349 32.1
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 5.5e-12 77.0 525 28.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-11 75.5 250 35.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.0e-11 73.2 257 35.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 8.0e-11 73.2 462 28.8
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.0e-10 72.8 386 31.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-10 72.4 413 29.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.4e-10 72.4 413 29.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.2e-10 70.5 399 30.3
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.5e-09 68.9 153 39.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.0e-09 68.6 301 34.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 7.5e-09 66.6 388 29.6
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.3e-08 65.9 507 28.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.8e-08 63.9 558 27.6
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 4.8e-08 63.9 517 26.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.1e-07 61.2 194 34.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 4.1e-07 60.8 61 52.5
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.2e-06 59.3 76 51.3


User provided reference genes

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