Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.1e-112 409.1 210 100.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 6.6e-82 307.8 216 78.7
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.5e-65 253.4 213 69.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.5e-65 252.7 210 67.1
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 2.8e-64 249.2 210 68.6
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 2.8e-64 249.2 234 62.8
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.6e-64 248.8 214 68.7
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 6.2e-64 248.1 210 67.1
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.1e-64 247.7 210 69.0
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.4e-63 246.9 210 66.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 5.2e-63 245.0 216 67.1
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 8.9e-63 244.2 222 64.0
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.2e-62 243.8 207 67.1
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.5e-62 243.4 215 67.4
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.0e-62 243.0 223 65.5
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.0e-62 243.0 211 67.3
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 2.0e-62 243.0 210 67.6
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.0e-62 243.0 228 64.9
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 2.6e-62 242.7 216 66.7
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.6e-62 242.7 217 66.8
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 4.4e-62 241.9 211 66.4
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 4.4e-62 241.9 208 67.3
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 5.8e-62 241.5 225 63.1
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.8e-62 241.5 210 65.2
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 5.8e-62 241.5 210 68.1
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 7.6e-62 241.1 210 67.6
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 9.9e-62 240.7 222 63.1
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.3e-61 240.4 213 66.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 1.7e-61 240.0 228 62.3
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 4.9e-61 238.4 210 68.1
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 8.4e-61 237.7 213 64.3
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 8.4e-61 237.7 242 61.2
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 5.4e-60 235.0 210 65.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 2.7e-59 232.6 230 62.2
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.7e-59 232.6 217 63.6
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 4.6e-59 231.9 216 65.7
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 6.0e-59 231.5 223 63.2
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 7.8e-59 231.1 226 63.3
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.0e-58 229.2 242 59.9
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.1e-57 227.3 236 59.3
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 2.5e-57 226.1 222 64.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 7.3e-57 224.6 246 56.9
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.1e-56 223.0 265 55.5
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 2.1e-56 223.0 235 59.6
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 6.2e-56 221.5 213 62.9
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 8.1e-56 221.1 214 62.6
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 4.0e-55 218.8 271 53.1
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.0e-55 218.8 238 59.7
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 6.9e-55 218.0 210 61.4
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 4.4e-54 215.3 212 61.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 5.8e-54 214.9 224 59.8
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.1e-52 210.7 215 60.9
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 2.4e-52 209.5 226 55.8
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.2e-52 209.1 215 59.5
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 9.3e-52 207.6 230 57.0
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.0e-51 204.9 216 60.2
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-50 203.8 210 58.6
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.9e-50 202.2 210 57.6
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.5e-49 200.3 168 65.5
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 4.8e-48 195.3 217 56.7
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.8e-47 193.4 184 60.9
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 3.4e-46 189.1 209 56.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.8e-46 188.3 213 57.3
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 3.2e-44 182.6 221 54.3
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.2e-44 182.6 174 63.2
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 3.5e-43 179.1 174 63.2
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 4.6e-43 178.7 213 55.9
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.8e-42 176.8 94 93.6
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.3e-42 176.4 92 94.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.0e-42 176.0 92 95.7
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.0e-42 176.0 222 52.3
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 5.1e-42 175.3 181 61.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 8.7e-42 174.5 192 57.8
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 8.7e-42 174.5 178 59.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.5e-41 173.7 92 93.5
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.5e-41 173.7 92 93.5
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.5e-41 173.7 92 93.5
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.9e-41 173.3 92 92.4
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 1.9e-41 173.3 92 92.4
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 2.5e-41 172.9 92 91.3
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 4.3e-41 172.2 92 91.3
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.3e-40 170.6 181 59.1
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 8.1e-40 167.9 184 58.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 6.9e-39 164.9 93 89.2
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 6.9e-39 164.9 176 61.4
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 9.0e-39 164.5 97 86.6
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.2e-38 164.1 92 90.2
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.9e-37 158.7 174 59.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.1e-36 157.5 226 49.6
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 4.2e-36 155.6 95 88.4
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 7.9e-35 151.4 171 57.9
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.0e-34 151.0 172 58.1
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.0e-34 151.0 167 58.7
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.1e-33 147.5 190 47.4
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 3.3e-33 146.0 77 90.9
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 2.1e-32 143.3 212 47.6
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 9.3e-28 127.9 100 73.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.6e-27 127.1 182 50.5
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.7e-27 126.3 242 42.6
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 3.5e-27 125.9 319 36.7
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 6.7e-26 121.7 294 38.1
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.9e-25 120.2 102 68.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.3e-24 117.5 265 37.4
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.3e-24 117.5 229 42.8
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 6.3e-24 115.2 215 43.3
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.8e-23 113.6 270 36.7
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.5e-22 110.5 63 84.1
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.0e-22 110.2 147 55.8
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.3e-21 107.5 176 42.0
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 3.0e-18 96.3 52 90.4
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 3.9e-18 95.9 293 34.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 3.9e-18 95.9 103 55.3
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 5.1e-18 95.5 213 39.0
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.2e-14 84.3 171 40.4
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.2e-14 84.3 171 40.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.5e-14 84.0 162 42.0
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-13 80.9 126 46.0
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 8.5e-13 78.2 40 90.0
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.6e-11 73.9 168 40.5
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.7e-11 73.2 119 46.2
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.8e-10 70.5 41 82.9
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.3e-09 66.2 54 66.7
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 4.4e-09 65.9 129 41.1
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 9.7e-09 64.7 171 32.7
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.8e-08 63.2 42 78.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.1e-07 61.2 40 70.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.1e-07 59.3 35 85.7
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 7.0e-07 58.5 77 54.5
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 3.5e-06 56.2 130 33.1


User provided reference genes

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