Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb179990 Zea mays HOM05D003652 ORTHO05D004190 2.8e-51 204.9 98 100.0
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 7.9e-46 186.8 93 96.8
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 1.1e-44 183.0 93 93.5
Zm00001eb125110 Zea mays HOM05D003652 ORTHO05D004190 1.1e-44 183.0 93 95.7
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 2.8e-43 178.3 93 92.5
Zm00001eb184190 Zea mays HOM05D003652 ORTHO05D004190 6.3e-43 177.2 92 93.5
Zm00001eb116630 Zea mays HOM05D003652 ORTHO05D004190 1.4e-39 166.0 84 95.2
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 3.2e-39 164.9 84 95.2
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 8.8e-37 156.8 93 78.5
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 2.4e-34 148.7 88 80.7
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 2.4e-34 148.7 92 76.1
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 4.1e-34 147.9 87 80.5
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 6.9e-34 147.1 92 76.1
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 2.6e-33 145.2 88 77.3
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 4.5e-33 144.4 88 78.4
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 4.5e-33 144.4 88 77.3
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 7.7e-33 143.7 88 77.3
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 1.0e-32 143.3 88 76.1
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 2.2e-32 142.1 88 75.0
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 2.2e-32 142.1 88 76.1
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 2.9e-32 141.7 88 75.0
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 2.9e-32 141.7 91 73.6
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 2.9e-32 141.7 88 76.1
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.8e-32 141.4 88 76.1
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 3.8e-32 141.4 88 76.1
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 3.8e-32 141.4 88 76.1
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 3.8e-32 141.4 88 75.0
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 3.8e-32 141.4 88 77.3
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 5.0e-32 141.0 88 73.9
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 5.0e-32 141.0 92 70.7
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 5.0e-32 141.0 92 70.7
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 5.0e-32 141.0 88 75.0
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 6.5e-32 140.6 88 73.9
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 6.5e-32 140.6 88 75.0
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 6.5e-32 140.6 88 73.9
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 8.5e-32 140.2 88 75.0
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 8.5e-32 140.2 92 72.8
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 76.1
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 1.1e-31 139.8 92 70.7
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 75.0
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 92 70.7
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 92 70.7
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 92 70.7
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 1.1e-31 139.8 92 70.7
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 73.9
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 77.3
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 76.1
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 73.9
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.1e-31 139.8 88 73.9
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.4e-31 139.4 92 70.7
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 1.4e-31 139.4 92 70.7
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 1.4e-31 139.4 92 70.7
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.4e-31 139.4 88 76.1
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 1.4e-31 139.4 88 73.9
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 1.9e-31 139.0 88 76.1
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 1.9e-31 139.0 88 72.7
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 1.9e-31 139.0 88 72.7
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 1.9e-31 139.0 88 72.7
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 2.5e-31 138.7 88 72.7
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 2.5e-31 138.7 88 72.7
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 2.5e-31 138.7 88 72.7
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 68.5
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 68.5
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 70.7
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 3.2e-31 138.3 92 68.5
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 3.2e-31 138.3 88 72.7
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 3.2e-31 138.3 87 73.6
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 3.2e-31 138.3 93 67.7
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 3.2e-31 138.3 88 73.9
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 3.2e-31 138.3 87 74.7
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 4.2e-31 137.9 88 73.9
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 5.5e-31 137.5 88 71.6
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 5.5e-31 137.5 87 73.6
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 5.5e-31 137.5 87 73.6
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 5.5e-31 137.5 88 75.0
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 7.2e-31 137.1 92 69.6
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 7.2e-31 137.1 88 72.7
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 7.2e-31 137.1 92 68.5
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 9.4e-31 136.7 92 69.6
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 9.4e-31 136.7 88 72.7
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 9.4e-31 136.7 88 71.6
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 1.2e-30 136.3 92 69.6
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.6e-30 136.0 94 64.9
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 1.6e-30 136.0 88 70.5
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 2.1e-30 135.6 94 62.8
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 2.1e-30 135.6 88 71.6
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 2.1e-30 135.6 87 72.4
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 2.1e-30 135.6 94 64.9
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 2.1e-30 135.6 88 72.7
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 2.7e-30 135.2 94 63.8
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.7e-30 135.2 94 64.9
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 2.7e-30 135.2 88 70.5
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 2.7e-30 135.2 88 71.6
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 2.7e-30 135.2 94 70.2
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 2.7e-30 135.2 88 72.7
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.7e-30 135.2 88 72.7
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 3.6e-30 134.8 87 72.4
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 3.6e-30 134.8 88 73.9
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 4.7e-30 134.4 88 71.6
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 4.7e-30 134.4 94 62.8
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 4.7e-30 134.4 88 71.6
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 4.7e-30 134.4 88 69.3
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 4.7e-30 134.4 92 67.4
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 6.1e-30 134.0 88 70.5
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 6.1e-30 134.0 88 72.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 7.9e-30 133.7 88 71.6
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 7.9e-30 133.7 92 68.5
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 1.0e-29 133.3 88 70.5
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.4e-29 132.9 87 71.3
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.4e-29 132.9 88 70.5
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 1.4e-29 132.9 88 71.6
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 1.8e-29 132.5 88 69.3
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 3.9e-29 131.3 87 69.0
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 3.9e-29 131.3 92 66.3
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 5.1e-29 131.0 87 70.1
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 5.1e-29 131.0 87 70.1
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 6.7e-29 130.6 94 62.8
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 6.7e-29 130.6 87 69.0
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 6.7e-29 130.6 95 69.5
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 1.1e-28 129.8 88 69.3
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 1.5e-28 129.4 86 70.9
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 1.5e-28 129.4 86 70.9
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 9.7e-28 126.7 79 75.9
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 9.7e-28 126.7 88 69.3
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.8e-27 125.2 79 74.7
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.8e-26 122.5 93 60.2
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.2e-25 119.8 117 53.8
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.2e-25 119.8 117 53.8
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.2e-25 119.8 117 53.8
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 7.7e-25 117.1 87 62.1
Zm00001eb201500 Zea mays HOM05D003652 ORTHO05D004190 7.7e-25 117.1 61 93.4
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 1.7e-24 115.9 87 63.2
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 3.6e-22 108.2 71 67.6
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 8.0e-22 107.1 83 62.7
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 5.2e-21 104.4 87 57.5
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 6.7e-21 104.0 69 69.6
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.6e-20 102.1 87 57.5
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-20 100.1 88 48.9
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 8.2e-19 97.1 87 52.9
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.2e-16 89.0 87 51.7
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 2.1e-14 82.4 43 86.0
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 4.0e-13 78.2 58 65.5
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 5.2e-13 77.8 88 47.7
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 2.7e-09 65.5 83 38.6


User provided reference genes

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