Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 2.7e-123 445.3 217 100.0
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 9.4e-116 420.2 217 92.6
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 9.8e-105 383.6 218 85.3
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 1.2e-89 333.6 218 73.9
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 3.4e-89 332.0 219 71.7
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 7.5e-89 330.9 219 71.7
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 2.2e-88 329.3 186 79.0
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 2.2e-88 329.3 186 78.0
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 3.7e-88 328.6 186 79.6
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 4.9e-88 328.2 217 71.4
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 6.4e-88 327.8 193 76.2
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.1e-87 327.0 219 71.2
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 3.2e-87 325.5 219 71.7
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 3.2e-87 325.5 186 78.5
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 3.2e-87 325.5 193 76.7
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 4.1e-87 325.1 186 78.5
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 4.1e-87 325.1 218 69.7
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 5.4e-87 324.7 219 70.3
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 5.4e-87 324.7 219 70.3
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.4e-87 324.7 219 70.3
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 7.0e-87 324.3 219 71.2
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.0e-87 324.3 186 78.5
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 7.0e-87 324.3 217 71.9
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 9.2e-87 323.9 219 69.9
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 9.2e-87 323.9 186 76.9
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 9.2e-87 323.9 217 71.4
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 9.2e-87 323.9 182 79.7
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 1.2e-86 323.6 188 79.3
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.2e-86 323.6 186 78.0
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.2e-86 323.6 218 70.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.6e-86 323.2 183 78.7
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 1.6e-86 323.2 184 78.8
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.6e-86 323.2 217 70.0
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.0e-86 322.8 185 78.4
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 2.0e-86 322.8 193 75.1
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 2.7e-86 322.4 188 78.7
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.7e-86 322.4 186 77.4
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.7e-86 322.4 186 77.4
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.5e-86 322.0 185 77.8
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.5e-86 322.0 192 75.5
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 3.5e-86 322.0 219 69.9
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 3.5e-86 322.0 216 69.4
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 4.6e-86 321.6 186 76.9
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 5.9e-86 321.2 216 67.6
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.9e-86 321.2 220 70.0
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 5.9e-86 321.2 218 70.2
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 7.8e-86 320.9 210 70.0
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.8e-86 320.9 183 78.1
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 1.0e-85 320.5 216 69.4
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 1.0e-85 320.5 216 69.4
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 1.0e-85 320.5 183 78.1
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 1.0e-85 320.5 217 70.0
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.0e-85 320.5 187 78.6
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 1.0e-85 320.5 217 68.2
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 1.3e-85 320.1 186 76.9
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.3e-85 320.1 183 77.0
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 1.3e-85 320.1 186 76.3
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 1.7e-85 319.7 183 78.1
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.7e-85 319.7 186 76.3
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.7e-85 319.7 188 77.1
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 1.7e-85 319.7 186 76.3
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.7e-85 319.7 218 70.6
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.3e-85 319.3 195 75.9
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 2.3e-85 319.3 216 69.4
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 2.3e-85 319.3 216 69.4
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 2.3e-85 319.3 210 70.5
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.3e-85 319.3 217 69.6
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.3e-85 319.3 217 69.6
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 3.0e-85 318.9 217 67.3
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 3.0e-85 318.9 216 69.0
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.0e-85 318.9 216 67.6
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 3.0e-85 318.9 220 69.1
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.0e-85 318.9 186 78.5
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 3.9e-85 318.5 216 68.5
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 3.9e-85 318.5 186 78.0
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.9e-85 318.5 218 70.2
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 5.0e-85 318.2 216 69.0
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 5.0e-85 318.2 217 66.8
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 6.6e-85 317.8 218 70.2
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 6.6e-85 317.8 197 74.1
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 8.6e-85 317.4 185 76.8
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.1e-84 317.0 216 69.4
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.1e-84 317.0 217 68.7
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.5e-84 316.6 217 66.4
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.5e-84 316.6 186 76.9
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.9e-84 316.2 216 68.5
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.5e-84 315.8 188 78.2
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 2.5e-84 315.8 185 75.7
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 4.3e-84 315.1 191 73.8
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 4.3e-84 315.1 192 75.5
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 5.6e-84 314.7 217 67.3
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 5.6e-84 314.7 218 67.9
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 9.5e-84 313.9 216 68.1
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 9.5e-84 313.9 184 75.5
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 9.5e-84 313.9 184 75.5
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 9.5e-84 313.9 186 76.3
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 9.5e-84 313.9 216 68.1
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 1.2e-83 313.5 217 68.2
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.2e-83 313.5 216 68.1
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 1.6e-83 313.2 199 70.9
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 2.1e-83 312.8 216 68.1
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 2.1e-83 312.8 217 67.3
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.6e-83 312.0 184 75.0
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.6e-83 312.0 184 75.0
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.2e-83 311.2 217 67.7
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 6.2e-83 311.2 218 67.9
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 8.0e-83 310.8 217 67.7
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 8.0e-83 310.8 217 69.1
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 1.0e-82 310.5 203 69.5
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.0e-82 310.5 212 68.9
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 1.0e-82 310.5 197 71.1
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.4e-82 310.1 220 66.8
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 1.8e-82 309.7 186 74.7
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 3.1e-82 308.9 211 69.7
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 3.1e-82 308.9 195 71.3
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 4.0e-82 308.5 181 76.2
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 4.0e-82 308.5 217 68.2
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 8.9e-82 307.4 219 67.1
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 1.2e-81 307.0 207 70.5
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 3.4e-81 305.4 216 64.4
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 3.4e-81 305.4 172 78.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 4.4e-81 305.1 183 73.8
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 5.8e-81 304.7 218 67.0
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 2.2e-80 302.8 214 68.2
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 2.2e-80 302.8 214 68.2
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 2.9e-80 302.4 228 65.8
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.7e-80 302.0 252 58.7
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 3.7e-80 302.0 185 73.0
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 6.4e-80 301.2 243 59.7
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 6.4e-80 301.2 236 61.9
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.9e-79 299.7 171 78.4
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 4.1e-79 298.5 173 75.7
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 4.1e-79 298.5 210 67.1
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 3.0e-77 292.4 229 62.0
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.1e-74 283.9 190 70.0
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 1.8e-74 283.1 208 62.5
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.5e-73 280.0 205 64.4
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 1.3e-72 276.9 215 63.3
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.4e-71 273.5 184 66.8
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.4e-71 273.5 215 62.3
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 5.4e-71 271.6 213 60.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.6e-70 270.0 181 69.1
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.0e-69 267.3 212 61.8
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.1e-68 263.8 217 59.0
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.1e-68 263.8 186 66.1
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.9e-63 246.5 213 58.7
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.3e-61 239.6 180 62.2
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 1.9e-60 236.5 187 64.2
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.4e-55 219.5 244 50.4
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 2.1e-54 216.5 135 69.6
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.1e-51 206.5 197 53.3
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 5.3e-50 201.8 183 52.5
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 1.2e-49 200.7 181 53.0
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.4e-47 193.0 181 53.6
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 3.9e-45 185.7 103 79.6
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.2e-39 165.6 132 65.9
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 1.6e-35 153.7 176 42.0
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 2.8e-35 152.9 88 77.3
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 3.7e-35 152.5 87 74.7
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 1.1e-34 151.0 108 63.9
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 2.4e-34 149.8 87 75.9
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 3.1e-34 149.4 88 76.1
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 4.0e-34 149.1 88 76.1
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 2.0e-33 146.7 96 70.8
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 2.0e-33 146.7 129 58.1
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 1.3e-32 144.1 84 76.2
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 1.2e-30 137.5 89 71.9
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 3.0e-29 132.9 75 78.7
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 4.3e-28 129.0 148 45.9
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 9.6e-28 127.9 110 61.8
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 6.3e-27 125.2 75 77.3
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 8.2e-27 124.8 73 74.0
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 2.0e-25 120.2 67 76.1
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 6.5e-24 115.2 62 77.4
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.4e-23 114.0 123 50.4
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 2.5e-20 103.2 117 44.4
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 4.5e-17 92.4 85 57.6
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 2.5e-15 86.7 82 57.3
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 1.2e-14 84.3 61 63.9
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 3.0e-13 79.7 202 30.7
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 9.7e-12 74.7 73 57.5
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 1.5e-09 67.4 219 31.1
BcaB08g35155 Brassica carinata HOM05D003659 ORTHO05D004298 1.3e-08 64.3 128 31.2
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 2.2e-08 63.5 41 68.3
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.2e-07 59.7 44 56.8
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 1.2e-06 57.8 110 36.4


User provided reference genes

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