Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.4e-109 399.8 223 100.0
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 2.6e-92 342.4 227 85.5
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 8.3e-51 204.5 219 55.3
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 1.5e-47 193.7 217 52.5
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 2.5e-47 193.0 191 56.5
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 2.5e-47 193.0 190 54.7
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 4.3e-47 192.2 195 56.4
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.6e-46 190.3 202 51.0
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.6e-46 190.3 191 56.0
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.1e-46 189.9 210 52.9
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.8e-46 189.5 194 53.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 2.8e-46 189.5 192 56.8
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 6.2e-46 188.3 198 54.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.1e-46 188.0 186 55.4
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.1e-45 187.6 194 52.1
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.1e-45 187.6 208 51.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.3e-45 186.4 208 51.4
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.3e-45 186.4 197 55.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 3.1e-45 186.0 198 52.5
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 8.9e-45 184.5 217 48.4
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.9e-45 184.5 206 52.9
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 8.9e-45 184.5 188 55.9
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 8.9e-45 184.5 184 55.4
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.2e-44 184.1 188 56.4
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.6e-44 183.0 190 54.7
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.4e-44 182.6 192 53.6
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.4e-44 182.6 189 55.0
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.4e-44 182.2 181 53.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 5.8e-44 181.8 165 60.0
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 9.9e-44 181.0 215 47.9
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.9e-43 179.5 187 54.0
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 4.9e-43 178.7 211 50.2
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 4.9e-43 178.7 199 54.3
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 6.4e-43 178.3 214 48.6
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.1e-42 177.6 190 54.2
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.1e-42 177.6 209 51.2
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.4e-42 177.2 186 55.9
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.9e-42 176.8 186 54.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 4.1e-42 175.6 210 47.6
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 7.1e-42 174.9 188 53.2
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 9.2e-42 174.5 190 53.2
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 9.2e-42 174.5 213 49.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 9.2e-42 174.5 187 52.9
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.2e-41 174.1 200 50.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 1.6e-41 173.7 216 49.1
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.7e-41 172.9 214 47.7
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.7e-41 172.9 204 50.5
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.7e-41 172.9 214 49.1
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.7e-41 172.9 207 50.2
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 6.0e-41 171.8 189 52.9
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 7.8e-41 171.4 190 54.2
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 3.9e-40 169.1 189 53.4
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 5.1e-40 168.7 191 50.8
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 6.6e-40 168.3 204 48.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 8.6e-40 167.9 189 51.3
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.1e-39 167.5 188 51.6
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.5e-39 166.4 189 51.3
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.3e-39 165.6 253 41.5
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 5.6e-39 165.2 151 60.3
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 5.6e-39 165.2 199 54.8
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.2e-38 164.1 186 51.1
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.2e-38 164.1 196 50.0
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 2.8e-38 162.9 199 47.7
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.8e-38 162.9 203 50.2
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.6e-38 162.5 187 49.2
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.6e-38 162.5 191 50.8
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.6e-38 162.5 194 51.0
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.2e-38 161.8 189 51.3
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.8e-37 160.2 194 50.5
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.8e-37 160.2 199 50.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.1e-37 159.5 194 50.5
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 3.1e-37 159.5 189 49.7
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 5.2e-37 158.7 198 47.5
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 6.9e-37 158.3 195 46.7
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.9e-37 157.9 214 45.8
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.5e-36 157.1 199 47.7
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.0e-36 156.8 205 48.3
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 3.4e-36 156.0 193 47.7
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 4.4e-36 155.6 247 40.5
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 5.8e-36 155.2 203 47.8
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.7e-35 153.7 211 45.0
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.2e-35 153.3 190 49.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.2e-35 153.3 162 54.9
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 6.4e-35 151.8 212 45.3
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.4e-34 150.6 213 45.5
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.9e-34 150.2 172 56.4
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 5.4e-34 148.7 210 45.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 9.3e-34 147.9 195 45.6
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 9.3e-34 147.9 145 57.2
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.2e-33 147.5 215 44.7
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 4.6e-33 145.6 181 48.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 4.6e-33 145.6 200 46.0
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 6.0e-33 145.2 192 46.9
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 6.0e-33 145.2 157 53.5
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-32 144.4 186 46.2
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-32 144.4 199 46.2
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.0e-32 144.4 202 45.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.0e-32 144.4 202 45.5
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 3.0e-32 142.9 204 45.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 3.9e-32 142.5 183 44.3
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 3.9e-32 142.5 148 56.8
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.1e-31 141.0 215 41.9
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.1e-31 141.0 161 54.0
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.5e-31 140.6 205 45.9
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.9e-31 140.2 194 43.8
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.9e-31 140.2 223 42.6
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 5.6e-31 138.7 146 54.8
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 2.8e-30 136.3 204 44.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.1e-29 134.4 105 69.5
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 5.3e-29 132.1 126 56.3
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.5e-28 130.6 147 53.1
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.5e-28 130.6 147 55.8
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 7.6e-28 128.3 163 52.8
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 6.4e-27 125.2 147 54.4
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.9e-26 123.6 200 41.5
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.9e-26 123.6 200 41.5
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.9e-26 123.6 200 41.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.2e-26 122.9 156 51.3
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 6.0e-25 118.6 218 39.4
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 5.1e-24 115.5 200 42.5
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 1.5e-23 114.0 122 47.5
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.3e-22 110.9 209 38.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.8e-22 109.8 206 40.8
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 8.1e-22 108.2 172 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.1e-21 107.8 144 47.9
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.1e-21 107.8 194 37.1
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 2.6e-20 103.2 157 37.6
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 4.5e-20 102.4 88 61.4
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 9.9e-20 101.3 205 38.5
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 9.9e-20 101.3 173 44.5
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 4.9e-19 99.0 220 35.5
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 6.4e-19 98.6 191 38.2
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 4.6e-17 92.4 234 32.1
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 4.6e-17 92.4 108 48.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.0e-17 92.0 223 36.3
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-15 87.4 128 44.5
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 5.6e-15 85.5 95 52.6
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 6.9e-13 78.6 148 37.2
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.3e-11 74.3 129 41.9
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.2e-11 73.6 87 54.0
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.1e-10 71.2 84 53.6
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.4e-10 70.9 114 41.2
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 5.7e-07 58.9 96 39.6
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 8.2e-06 55.1 91 37.4


User provided reference genes

Program Settings