Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb178640 Zea mays HOM05D019809 ORTHO05D002777 1.1e-66 256.5 132 100.0
Zm00001eb005820 Zea mays HOM05D000343 ORTHO05D002777 1.5e-39 166.4 98 90.8
Os03g0178100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D002777 1.7e-30 136.3 98 77.6
Zm00001eb153920 Zea mays HOM05D019809 ORTHO05D002777 4.5e-28 128.3 82 84.1
Zm00001eb050720 Zea mays HOM05D000343 ORTHO05D002777 1.1e-26 123.6 78 85.9
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.9e-26 122.9 78 84.6
Zm00001eb409120 Zea mays HOM05D019809 ORTHO05D002777 3.2e-26 122.1 105 67.6
Zm00001eb301600 Zea mays HOM05D019809 ORTHO05D002777 1.0e-24 117.1 93 69.9
HanXRQChr03g0065671 Helianthus annuus HOM05D000343 ORTHO05D002777 5.0e-19 98.2 98 56.1
PGR031G2498 Punica granatum HOM05D000343 ORTHO05D002777 1.9e-18 96.3 100 55.0
Hma1.2p1_1980F.1_g309870 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 3.2e-18 95.5 98 56.1
Lj7C220T7 Lonicera japonica HOM05D000343 ORTHO05D002777 3.2e-18 95.5 101 56.4
TAR383G0628 Trochodendron aralioides HOM05D000343 ORTHO05D002777 3.2e-18 95.5 103 52.4
MBI19_g11826_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 5.5e-18 94.7 101 54.5
Rhsim02G0200800 Rhododendron simsii HOM05D000343 ORTHO05D002777 9.4e-18 94.0 98 56.1
Eucgr.C00731 Eucalyptus grandis HOM05D000343 ORTHO05D002777 3.6e-17 92.0 104 51.0
RcHm_v2.0_Chr6g0311921 Rosa chinensis HOM05D000343 ORTHO05D002777 3.6e-17 92.0 101 52.5
THA.LOC104810955 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 4.7e-17 91.7 100 53.0
Atru.chr7.1842 Acer truncatum HOM05D000343 ORTHO05D002777 6.1e-17 91.3 105 51.4
Cfa017866 Carpinus fangiana HOM05D000343 ORTHO05D002777 6.1e-17 91.3 103 52.4
FAN27G2559 Fragaria x ananassa HOM05D000343 ORTHO05D002777 6.1e-17 91.3 99 53.5
Ca_15832_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 8.0e-17 90.9 100 51.0
Nn8g38654 Nelumbo nucifera HOM05D000343 ORTHO05D002777 1.8e-16 89.7 104 49.0
FvH4_2g30930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.3e-16 89.4 99 52.5
FAN15G2596 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.0e-16 89.0 99 52.5
Peaxi162Scf00486g00096 Petunia axillaris HOM05D000343 ORTHO05D002777 3.0e-16 89.0 101 52.5
Zm00001eb137980 Zea mays HOM05D019809 ORTHO05D004386 3.9e-16 88.6 80 67.5
Glyma.06G056300 Glycine max HOM05D000343 ORTHO05D002777 5.2e-16 88.2 100 49.0
MD15G1049400 Malus domestica HOM05D000343 ORTHO05D002777 5.2e-16 88.2 99 51.5
BcaB08g36468 Brassica carinata HOM05D000343 ORTHO05D002777 6.7e-16 87.8 100 53.0
CANSAT25G0648 Cannabis sativa HOM05D000343 ORTHO05D002777 6.7e-16 87.8 102 49.0
CiPaw.15G091500 Carya illinoinensis HOM05D000343 ORTHO05D002777 6.7e-16 87.8 100 52.0
Lsat_1_v5_gn_7_58281 Lactuca sativa HOM05D000343 ORTHO05D002777 6.7e-16 87.8 101 50.5
Manes.03G053565 Manihot esculenta HOM05D000343 ORTHO05D002777 6.7e-16 87.8 103 51.5
vmacro11174 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 6.7e-16 87.8 100 52.0
AUR62009076 Chenopodium quinoa HOM05D000343 ORTHO05D002777 8.8e-16 87.4 100 52.0
FAN24G0686 Fragaria x ananassa HOM05D000343 ORTHO05D002777 8.8e-16 87.4 99 51.5
GSVIVG01035474001 Vitis vinifera HOM05D000343 ORTHO05D002777 8.8e-16 87.4 99 52.5
EL10Ac2g03774 Beta vulgaris HOM05D000343 ORTHO05D002777 1.1e-15 87.0 100 51.0
A10p18790 Brassica napus HOM05D000343 ORTHO05D002777 1.1e-15 87.0 101 52.5
C09p54810 Brassica napus HOM05D000343 ORTHO05D002777 1.1e-15 87.0 101 52.5
BolC9t58341H Brassica oleracea HOM05D000343 ORTHO05D002777 1.1e-15 87.0 101 52.5
BraA10t43959Z Brassica rapa HOM05D000343 ORTHO05D002777 1.1e-15 87.0 101 52.5
AUR62020591 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.5e-15 86.7 100 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1654 Anthoceros agrestis HOM05D000343 ORTHO05D002777 2.0e-15 86.3 99 54.5
Aqoxy7G03994 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 2.0e-15 86.3 105 47.6
Prupe.1G403700 Prunus persica HOM05D000343 ORTHO05D002777 2.0e-15 86.3 102 49.0
Zm00001eb282330 Zea mays HOM05D019809 ORTHO05D004386 2.0e-15 86.3 64 75.0
CSS0040015 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 2.6e-15 85.9 103 49.5
Psat5g030200 Pisum sativum HOM05D000343 ORTHO05D002777 2.6e-15 85.9 100 50.0
Haze_18301 Corylus avellana HOM05D000343 ORTHO05D002777 3.3e-15 85.5 103 50.5
Dinv22939 Davidia involucrata HOM05D000343 ORTHO05D002777 3.3e-15 85.5 100 50.0
Nitab4.5_0000446g0160 Nicotiana tabacum HOM05D000343 ORTHO05D002777 4.4e-15 85.1 100 51.0
Sabra18G0045800 Salix brachista HOM05D000343 ORTHO05D002777 4.4e-15 85.1 104 48.1
Thhalv10012640m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 5.7e-15 84.7 100 51.0
Lalb_Chr23g0267981 Lupinus albus HOM05D000343 ORTHO05D002777 5.7e-15 84.7 100 47.0
Nitab4.5_0007459g0030 Nicotiana tabacum HOM05D000343 ORTHO05D002777 5.7e-15 84.7 100 50.0
AL6G32890 Arabidopsis lyrata HOM05D000343 ORTHO05D002777 7.4e-15 84.3 100 50.0
Ciclev10007408m.g Citrus clementina HOM05D000343 ORTHO05D002777 7.4e-15 84.3 105 46.7
CsaV3_4G036070 Cucumis sativus L. HOM05D000343 ORTHO05D002777 7.4e-15 84.3 105 46.7
Potri.018G047800 Populus trichocarpa HOM05D000343 ORTHO05D002777 7.4e-15 84.3 104 48.1
Solyc08g061610.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 7.4e-15 84.3 100 50.0
Sopen08g017060 Solanum pennellii HOM05D000343 ORTHO05D002777 7.4e-15 84.3 100 50.0
TWI32G1354 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 7.4e-15 84.3 103 47.6
Carub.0006s1957 Capsella rubella HOM05D000343 ORTHO05D002777 9.7e-15 84.0 100 50.0
DCAR_001233 Daucus carota HOM05D000343 ORTHO05D002777 9.7e-15 84.0 100 48.0
FAN20G2735 Fragaria x ananassa HOM05D000343 ORTHO05D002777 9.7e-15 84.0 99 51.5
Lj1g0013438 Lotus japonicus HOM05D000343 ORTHO05D002777 9.7e-15 84.0 102 47.1
HPP92_011059 Vanilla planifolia HOM05D000343 ORTHO05D002777 9.7e-15 84.0 102 49.0
Duzib150G1472 Durio zibethinus HOM05D000343 ORTHO05D002777 1.3e-14 83.6 103 45.6
Sed0004786 Sechium edule HOM05D000343 ORTHO05D002777 1.3e-14 83.6 98 50.0
Hund03296 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.3e-14 83.6 100 51.0
COL.COLO4_21144 Corchorus olitorius HOM05D000343 ORTHO05D002777 1.7e-14 83.2 103 43.7
Phvul.009G082400 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 1.7e-14 83.2 100 48.0
QL02p017067 Quercus lobata HOM05D000343 ORTHO05D002777 1.7e-14 83.2 103 47.6
Sp6g23260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 1.7e-14 83.2 100 50.0
Aa31LG1G13490 Aethionema arabicum HOM05D000343 ORTHO05D002777 2.2e-14 82.8 100 51.0
Medtr3g105190 Medicago truncatula HOM05D000343 ORTHO05D002777 2.2e-14 82.8 100 48.0
Sc09g0010130 Simmondsia chinensis HOM05D000343 ORTHO05D002777 2.2e-14 82.8 103 49.5
Sabra06G0170100 Salix brachista HOM05D000343 ORTHO05D002777 2.8e-14 82.4 104 47.1
Ah.10g033930 Amaranthus hybridus HOM05D000343 ORTHO05D002777 3.7e-14 82.0 100 48.0
AT5G21930 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 4.8e-14 81.6 100 49.0
Cpa.g.sc126.19 Carica papaya HOM05D000343 ORTHO05D002777 4.8e-14 81.6 106 48.1
Gohir.A06G083200 Gossypium hirsutum HOM05D000343 ORTHO05D002777 4.8e-14 81.6 103 45.6
Gohir.D06G082900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 4.8e-14 81.6 103 45.6
Gorai.010G096400 Gossypium raimondii HOM05D000343 ORTHO05D002777 4.8e-14 81.6 103 45.6
PSO135G0347 Papaver somniferum HOM05D000343 ORTHO05D002777 4.8e-14 81.6 104 49.0
Thecc.09G063900 Theobroma cacao HOM05D000343 ORTHO05D002777 4.8e-14 81.6 103 45.6
MELO3C016915.2 Cucumis melo HOM05D000343 ORTHO05D002777 6.3e-14 81.3 105 44.8
Duzib168G0767 Durio zibethinus HOM05D000343 ORTHO05D002777 8.2e-14 80.9 103 45.6
ECA240G4338 Erigeron canadensis HOM05D000343 ORTHO05D002777 8.2e-14 80.9 100 47.0
Sed0027862 Sechium edule HOM05D000343 ORTHO05D002777 8.2e-14 80.9 102 46.1
arahy.Tifrunner.gnm1.ann1.ALH963 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-13 80.5 105 46.7
arahy.Tifrunner.gnm1.ann1.Y6FS7J Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-13 80.5 105 46.7
CDE06G1102 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.1e-13 80.5 98 49.0
ClCG05G015770 Citrullus lanatus HOM05D000343 ORTHO05D002777 3.1e-13 79.0 105 42.9
Mapoly0079s0021 Marchantia polymorpha HOM05D000343 ORTHO05D002777 4.1e-13 78.6 103 48.5
Hund19419 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.6e-12 76.6 101 49.5
ATR0598G285 Amborella trichopoda HOM05D000343 ORTHO05D002777 5.9e-12 74.7 108 45.4
Oeu001679.1 Olea europaea HOM05D000343 ORTHO05D002777 5.9e-12 74.7 101 45.5
SGA_v2.0_scaffold20G09154 Striga asiatica HOM05D000343 ORTHO05D002777 1.0e-11 73.9 101 45.5
SalBow4G1343 Salvia bowleyana HOM05D000343 ORTHO05D002777 1.3e-11 73.6 101 44.6
unitig_748.g7563 Utricularia gibba HOM05D000343 ORTHO05D002777 2.9e-11 72.4 101 44.6
SMO358G0202 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 3.8e-11 72.0 99 51.5
VMungo1309G2720 Vigna mungo HOM05D000343 ORTHO05D002777 5.5e-10 68.2 82 47.6
TPR.G3522 Trifolium pratense HOM05D000343 ORTHO05D002777 1.6e-09 66.6 92 42.4
Migut.A00072 Erythranthe guttata HOM05D000343 ORTHO05D002777 3.6e-09 65.5 101 42.6
Pp3c16_16360 Physcomitrium patens HOM05D000343 ORTHO05D002777 3.6e-09 65.5 101 44.6
CDE07G1800 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 2.3e-08 62.8 59 52.5


User provided reference genes

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