Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 3.8e-84 314.7 150 100.0
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 2.4e-62 242.3 149 78.5
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.0e-56 222.6 130 75.4
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.3e-55 219.9 132 75.8
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.3e-55 219.9 138 71.7
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 2.2e-55 219.2 141 68.1
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 3.8e-55 218.4 138 70.3
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 4.9e-55 218.0 139 74.1
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 4.9e-55 218.0 140 71.4
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 6.4e-55 217.6 141 68.1
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 8.4e-55 217.2 121 79.3
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 1.4e-54 216.5 130 73.8
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.4e-54 216.5 132 72.7
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 1.4e-54 216.5 141 67.4
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 2.4e-54 215.7 138 69.6
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 2.4e-54 215.7 138 68.8
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 2.4e-54 215.7 137 70.1
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 2.4e-54 215.7 130 73.1
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.2e-54 215.3 126 76.2
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.2e-54 215.3 139 70.5
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 4.1e-54 214.9 138 71.7
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 4.1e-54 214.9 128 72.7
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 5.4e-54 214.5 122 78.7
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 5.4e-54 214.5 140 68.6
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 5.4e-54 214.5 138 70.3
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 5.4e-54 214.5 128 74.2
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 7.1e-54 214.2 138 70.3
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 9.2e-54 213.8 138 69.6
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 9.2e-54 213.8 138 67.4
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 9.2e-54 213.8 138 68.8
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.2e-53 213.4 124 77.4
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 1.2e-53 213.4 138 68.1
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 1.2e-53 213.4 138 68.1
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.2e-53 213.4 139 66.9
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 1.6e-53 213.0 143 69.9
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.6e-53 213.0 134 67.9
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 1.6e-53 213.0 138 68.1
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 2.1e-53 212.6 132 72.7
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.7e-53 212.2 138 66.7
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 2.7e-53 212.2 139 66.2
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.5e-53 211.8 139 66.2
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 3.5e-53 211.8 124 75.0
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.5e-53 211.8 135 71.9
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 4.6e-53 211.5 137 69.3
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.6e-53 211.5 137 69.3
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 4.6e-53 211.5 134 71.6
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 6.0e-53 211.1 127 73.2
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 6.0e-53 211.1 132 70.5
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.3e-52 209.9 130 71.5
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.3e-52 209.9 138 69.6
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 1.3e-52 209.9 134 67.9
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 1.7e-52 209.5 136 69.9
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.7e-52 209.5 125 74.4
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 1.7e-52 209.5 138 66.7
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 1.7e-52 209.5 145 66.2
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 2.3e-52 209.1 132 70.5
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 2.3e-52 209.1 132 70.5
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 3.0e-52 208.8 137 67.9
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 3.9e-52 208.4 142 69.0
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 3.9e-52 208.4 122 76.2
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 3.9e-52 208.4 131 71.0
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 5.1e-52 208.0 137 68.6
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 6.6e-52 207.6 138 70.3
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 6.6e-52 207.6 132 69.7
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 6.6e-52 207.6 138 67.4
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 6.6e-52 207.6 120 76.7
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 6.6e-52 207.6 142 69.0
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 8.6e-52 207.2 137 67.2
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.6e-52 207.2 140 68.6
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 8.6e-52 207.2 134 67.9
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 8.6e-52 207.2 121 74.4
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 8.6e-52 207.2 132 70.5
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 8.6e-52 207.2 137 67.2
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 1.5e-51 206.5 137 67.9
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 1.5e-51 206.5 137 67.2
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.5e-51 206.5 138 64.5
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.5e-51 206.5 138 67.4
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.9e-51 206.1 139 68.3
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 2.5e-51 205.7 121 76.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.5e-51 205.7 138 65.2
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 2.5e-51 205.7 139 69.8
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.3e-51 205.3 140 65.7
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.3e-51 205.3 138 65.2
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 4.3e-51 204.9 134 70.1
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 4.3e-51 204.9 134 70.1
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 4.3e-51 204.9 131 73.3
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.6e-51 204.5 140 66.4
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 7.3e-51 204.1 141 67.4
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 9.6e-51 203.8 134 70.1
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 1.2e-50 203.4 135 69.6
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 2.1e-50 202.6 134 67.9
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 2.1e-50 202.6 141 64.5
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.1e-50 202.6 134 65.7
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 2.8e-50 202.2 139 66.9
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 2.8e-50 202.2 134 65.7
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 3.6e-50 201.8 134 65.7
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 4.7e-50 201.4 139 66.9
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 6.2e-50 201.1 139 66.9
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 6.2e-50 201.1 134 68.7
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 6.2e-50 201.1 171 57.3
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 1.4e-49 199.9 139 66.9
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 1.8e-49 199.5 136 65.4
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 3.1e-49 198.7 140 65.7
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 5.4e-46 188.0 109 77.1
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.6e-45 186.4 165 53.3
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 2.1e-45 186.0 144 62.5
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 4.6e-45 184.9 189 49.2
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 7.8e-45 184.1 112 76.8
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 5.8e-40 167.9 152 55.9
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 8.4e-39 164.1 97 74.2
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 4.6e-37 158.3 99 71.7
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 6.0e-37 157.9 92 77.2
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 5.1e-36 154.8 93 75.3
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 9.6e-35 150.6 94 69.1
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 9.9e-32 140.6 88 71.6
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 3.8e-31 138.7 107 64.5
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.4e-31 137.9 95 64.2
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 5.1e-20 101.7 112 50.9
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 5.9e-16 88.2 51 78.4
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.8e-10 69.3 41 70.7
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 6.3e-10 68.2 35 91.4
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 4.5e-08 62.0 45 64.4
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 1.7e-07 60.1 35 65.7
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.2e-06 55.8 28 85.7


User provided reference genes

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