Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.5e-172 608.2 308 100.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.9e-122 443.0 306 75.2
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.3e-122 442.2 307 74.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 9.5e-122 440.7 306 74.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.8e-121 439.1 282 79.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 6.2e-121 438.0 273 79.5
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.4e-120 436.8 315 72.4
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 5.2e-120 434.9 317 72.2
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.8e-120 434.5 272 78.3
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 6.8e-120 434.5 272 77.9
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 2.0e-119 433.0 264 80.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.4e-119 432.2 272 77.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 4.4e-119 431.8 289 75.4
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 5.8e-119 431.4 269 78.8
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 7.6e-119 431.0 291 74.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.6e-119 431.0 271 77.9
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 9.9e-119 430.6 291 73.5
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 9.9e-119 430.6 274 77.4
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 9.9e-119 430.6 274 77.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 9.9e-119 430.6 272 75.4
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.7e-118 429.9 289 75.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.7e-118 429.9 295 73.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-118 429.5 275 76.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-118 429.5 271 77.5
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 2.9e-118 429.1 291 73.2
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 3.8e-118 428.7 289 75.1
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.8e-118 428.7 281 76.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 8.4e-118 427.6 273 76.6
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 8.4e-118 427.6 287 74.9
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.1e-117 427.2 271 77.1
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-117 427.2 279 74.2
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.1e-117 427.2 279 76.7
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.4e-117 426.8 291 73.5
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.4e-117 426.8 303 73.3
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.9e-117 426.4 264 76.5
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.9e-117 426.4 269 77.3
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 2.4e-117 426.0 291 73.5
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.4e-117 426.0 266 80.1
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 3.2e-117 425.6 270 76.3
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 4.1e-117 425.2 287 74.2
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 4.1e-117 425.2 287 74.9
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 5.4e-117 424.9 291 73.2
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.4e-117 424.9 268 77.6
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 7.1e-117 424.5 283 75.3
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 7.1e-117 424.5 282 75.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 9.2e-117 424.1 288 74.3
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 9.2e-117 424.1 256 80.5
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 9.2e-117 424.1 269 78.1
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 9.2e-117 424.1 273 78.4
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 9.2e-117 424.1 263 79.1
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.2e-116 423.7 266 79.3
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.2e-116 423.7 255 81.6
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.6e-116 423.3 293 73.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.6e-116 423.3 269 78.8
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.6e-116 423.3 278 75.9
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 3.5e-116 422.2 288 74.0
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 6.0e-116 421.4 278 74.8
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.3e-115 420.2 270 82.2
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.3e-115 420.2 256 79.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-115 420.2 255 80.0
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.7e-115 419.9 291 72.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.3e-115 419.5 267 76.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 2.3e-115 419.5 303 69.3
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.3e-115 419.5 312 70.2
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.3e-115 419.5 272 76.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.9e-115 418.7 303 70.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.9e-115 418.7 303 70.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 6.6e-115 417.9 289 72.0
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 8.7e-115 417.5 281 73.7
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.1e-114 417.2 252 80.6
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 3.3e-114 415.6 272 75.7
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.3e-114 415.6 310 69.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 4.3e-114 415.2 263 74.9
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.3e-114 414.5 289 71.3
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 9.6e-114 414.1 274 73.7
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 2.8e-113 412.5 277 72.9
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 3.6e-113 412.1 277 72.9
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 4.0e-112 408.7 240 80.8
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 4.0e-112 408.7 240 80.8
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 5.2e-112 408.3 288 70.5
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.0e-112 407.5 276 72.5
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 9.0e-112 407.5 284 71.8
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.5e-111 406.8 300 68.7
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.6e-111 406.0 253 77.9
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 3.4e-111 405.6 312 68.6
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.4e-111 405.6 264 74.2
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.8e-111 404.8 240 79.6
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.9e-110 402.5 295 69.5
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.9e-110 401.7 295 67.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 8.4e-110 401.0 291 69.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.1e-109 400.6 273 72.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 1.4e-109 400.2 285 71.6
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.4e-109 400.2 272 74.6
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 3.2e-109 399.1 240 78.8
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.1e-108 396.4 307 64.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.9e-102 375.9 312 64.1
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.0e-99 367.5 282 66.3
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 3.3e-98 362.5 279 66.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.1e-96 357.5 277 65.3
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.8e-95 351.7 287 63.1
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.8e-95 351.7 260 64.6
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 9.9e-95 350.9 289 60.2
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 6.4e-94 348.2 220 80.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.9e-90 336.7 192 83.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 4.8e-89 332.0 269 62.8
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.1e-88 329.3 239 72.4
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 9.3e-85 317.8 190 78.4
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 9.3e-85 317.8 190 80.5
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.7e-84 316.2 257 63.0
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.3e-82 309.3 192 74.5
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 3.3e-82 309.3 192 74.5
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.3e-81 307.4 264 59.1
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.2e-81 306.6 198 78.3
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.6e-79 299.7 240 65.4
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.9e-77 293.5 240 60.4
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.7e-73 279.3 174 79.3
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.8e-72 276.9 188 75.0
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.6e-63 246.5 210 62.9
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 3.8e-62 242.7 255 51.4
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.8e-57 226.5 188 62.2
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 5.9e-55 218.8 157 70.7
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.5e-54 215.3 258 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.4e-34 149.4 275 37.1
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 2.8e-33 146.7 85 77.6
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.1e-32 143.3 129 56.6
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.1e-24 116.3 319 31.3
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.5e-21 107.1 291 33.7
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 4.4e-18 96.3 65 67.7
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.9e-14 83.2 104 51.9
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.5e-13 81.3 65 63.1
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.7e-09 67.8 99 51.5


User provided reference genes

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