Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb176640 Zea mays HOM05D000651 ORTHO05D444690 2.5e-46 188.3 89 100.0
Zm00001eb297170 Zea mays HOM05D000651 ORTHO05D003435 4.7e-21 104.4 65 81.5
Os05g0582800 Oryza sativa ssp. japonica HOM05D000651 ORTHO05D003435 1.8e-12 75.9 64 59.4
Os06g0561100 Oryza sativa ssp. japonica HOM05D000651 ORTHO05D003435 2.6e-11 72.0 64 56.2
Os01g0215100 Oryza sativa ssp. japonica HOM05D000651 ORTHO05D003435 8.3e-10 67.0 66 56.1
Os05g0582500 Oryza sativa ssp. japonica HOM05D000651 ORTHO05D003435 1.8e-09 65.9 70 50.0
PGR119G0102 Punica granatum HOM05D000651 ORTHO05D003435 5.4e-09 64.3 66 45.5
PGR119G2507 Punica granatum HOM05D000651 ORTHO05D003435 9.2e-09 63.5 66 45.5
SalBow8G2659 Salvia bowleyana HOM05D000651 ORTHO05D003435 1.2e-08 63.2 66 47.0
SalBow8G0771 Salvia bowleyana HOM05D000651 ORTHO05D003435 4.5e-08 61.2 66 45.5
Medtr4g084710 Medicago truncatula HOM05D000651 ORTHO05D003435 7.8e-08 60.5 66 43.9
Aqoxy3G02799 Aquilegia oxysepala HOM05D000651 ORTHO05D003435 1.0e-07 60.1 66 47.0
Aqoxy3G02802 Aquilegia oxysepala HOM05D000651 ORTHO05D003435 1.0e-07 60.1 66 45.5
SGA_v2.0_scaffold119G32660 Striga asiatica HOM05D000651 ORTHO05D003435 1.0e-07 60.1 66 48.5
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 1.3e-07 59.7 64 43.8
unitig_748.g8704 Utricularia gibba HOM05D000651 ORTHO05D003435 1.7e-07 59.3 64 43.8
AUR62014178 Chenopodium quinoa HOM05D000651 ORTHO05D003435 2.3e-07 58.9 64 50.0
Nitab4.5_0005150g0050 Nicotiana tabacum HOM05D005011 ORTHO05D006443 2.9e-07 58.5 64 48.4
Oeu019966.1 Olea europaea HOM05D000651 ORTHO05D003435 3.9e-07 58.2 63 49.2
ECA246G3348 Erigeron canadensis HOM05D000651 ORTHO05D003435 5.0e-07 57.8 66 45.5
Actinidia08056 Actinidia chinensis HOM05D000651 ORTHO05D003435 6.6e-07 57.4 66 43.9
CDE02G3974 Ceratophyllum demersum HOM05D000651 ORTHO05D003435 6.6e-07 57.4 61 52.5
AUR62002757 Chenopodium quinoa HOM05D000651 ORTHO05D003435 6.6e-07 57.4 64 48.4
EL10Ac6g14044 Beta vulgaris HOM05D000651 ORTHO05D003435 8.6e-07 57.0 66 45.5
Oeu032024.1 Olea europaea HOM05D000651 ORTHO05D003435 8.6e-07 57.0 64 50.0
arahy.Tifrunner.gnm1.ann1.21IKS3 Arachis hypogaea HOM05D000651 ORTHO05D003435 1.1e-06 56.6 66 40.9
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.1e-06 56.6 66 40.9
Glyma.20G015400 Glycine max HOM05D000651 ORTHO05D003435 1.1e-06 56.6 66 43.9
Glyma.20G016750 Glycine max HOM05D000651 ORTHO05D003435 1.1e-06 56.6 66 43.9
Lj4g0025550 Lotus japonicus HOM05D000651 ORTHO05D003435 1.1e-06 56.6 66 42.4
Solyc09g007640.4 Solanum lycopersicum HOM05D000651 ORTHO05D003435 1.1e-06 56.6 64 46.9
Sopen09g002510 Solanum pennellii HOM05D000651 ORTHO05D003435 1.1e-06 56.6 64 46.9
DCAR_030221 Daucus carota HOM05D000651 ORTHO05D003435 1.5e-06 56.2 64 45.3
ECA240G4370 Erigeron canadensis HOM05D000651 ORTHO05D003435 1.5e-06 56.2 66 45.5
RcHm_v2.0_Chr4g0441341 Rosa chinensis HOM05D000651 ORTHO05D003435 1.5e-06 56.2 68 41.2
PGSC0003DMG400001753 Solanum tuberosum HOM05D000651 ORTHO05D003435 1.5e-06 56.2 64 46.9
CSS0009730 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003435 1.9e-06 55.8 66 43.9
CSS0024016 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003435 1.9e-06 55.8 66 43.9
Cfa015010 Carpinus fangiana HOM05D000651 ORTHO05D003435 1.9e-06 55.8 66 43.9
Ca_18735_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003435 1.9e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.DC62BH Arachis hypogaea HOM05D000651 ORTHO05D003435 2.5e-06 55.5 66 40.9
Peaxi162Scf00120g00210 Petunia axillaris HOM05D000651 ORTHO05D003435 2.5e-06 55.5 64 43.8
SalBow2G1618 Salvia bowleyana HOM05D000651 ORTHO05D003435 2.5e-06 55.5 66 47.0
Sed0020091 Sechium edule HOM05D000651 ORTHO05D003435 2.5e-06 55.5 66 40.9
TWI79G0957 Tripterygium wilfordii HOM05D000651 ORTHO05D003435 2.5e-06 55.5 66 45.5
MD16G1027500 Malus domestica HOM05D000651 ORTHO05D003435 3.3e-06 55.1 66 43.9
Manes.03G131725 Manihot esculenta HOM05D000651 ORTHO05D003435 3.3e-06 55.1 66 45.5
Manes.15G128000 Manihot esculenta HOM05D000651 ORTHO05D003435 3.3e-06 55.1 66 45.5
PSO017G0211 Papaver somniferum HOM05D000651 ORTHO05D003435 3.3e-06 55.1 66 43.9
Sc04g0005380 Simmondsia chinensis HOM05D000651 ORTHO05D003435 3.3e-06 55.1 66 43.9
Atru.chr11.927 Acer truncatum HOM05D000651 ORTHO05D003435 4.3e-06 54.7 66 47.0
BolC8t52071H Brassica oleracea HOM05D000651 ORTHO05D003435 4.3e-06 54.7 63 47.6
Cfa008200 Carpinus fangiana HOM05D000651 ORTHO05D003435 4.3e-06 54.7 66 42.4
CiPaw.05G189700 Carya illinoinensis HOM05D000651 ORTHO05D003435 4.3e-06 54.7 67 43.3
Cc11_g08610 Coffea canephora HOM05D000651 ORTHO05D003435 4.3e-06 54.7 66 45.5
Eucgr.G02184 Eucalyptus grandis HOM05D000651 ORTHO05D003435 4.3e-06 54.7 64 46.9
Glyma.07G218400 Glycine max HOM05D000651 ORTHO05D003435 4.3e-06 54.7 66 42.4
MBI10_g02386_MAGBIO Magnolia biondii HOM05D000651 ORTHO05D003435 4.3e-06 54.7 63 44.4
MD13G1025000 Malus domestica HOM05D000651 ORTHO05D003435 4.3e-06 54.7 66 42.4
Nn3g18232 Nelumbo nucifera HOM05D000651 ORTHO05D003435 4.3e-06 54.7 64 46.9
Oeu037314.4 Olea europaea HOM05D002812 ORTHO05D003435 4.3e-06 54.7 63 47.6
Psat7g128480 Pisum sativum HOM05D000651 ORTHO05D003435 4.3e-06 54.7 64 43.8
COL.COLO4_20490 Corchorus olitorius HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 40.9
FvH4_4g32490 Fragaria vesca HOM05D000651 ORTHO05D003435 5.6e-06 54.3 61 47.5
FAN12G3244 Fragaria x ananassa HOM05D000651 ORTHO05D003435 5.6e-06 54.3 61 47.5
FAN17G0487 Fragaria x ananassa HOM05D000651 ORTHO05D003435 5.6e-06 54.3 61 47.5
MBI10_g02385_MAGBIO Magnolia biondii HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 42.4
Psat2g004720 Pisum sativum HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 37.9
Thecc.02G282200 Theobroma cacao HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 42.4
vmacro00416 Vaccinium macrocarpon HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 43.9
VMungo0251G0324 Vigna mungo HOM05D000651 ORTHO05D003435 5.6e-06 54.3 66 40.9
Zm00001eb165430 Zea mays HOM05D000651 ORTHO05D003435 5.6e-06 54.3 80 41.2
Ciclev10014786m.g Citrus clementina HOM05D000651 ORTHO05D003435 7.3e-06 53.9 64 45.3
Lalb_Chr05g0219521 Lupinus albus HOM05D000651 ORTHO05D003435 7.3e-06 53.9 66 39.4
Os05g0582600 Oryza sativa ssp. japonica HOM05D000651 ORTHO05D003435 7.3e-06 53.9 74 40.5
Peaxi162Scf00159g00827 Petunia axillaris HOM05D000651 ORTHO05D003435 7.3e-06 53.9 64 45.3
Sabra08G0098400 Salix brachista HOM05D000651 ORTHO05D003435 7.3e-06 53.9 66 43.9
TAR622G0208 Trochodendron aralioides HOM05D000651 ORTHO05D003435 7.3e-06 53.9 63 47.6
C08p45230 Brassica napus HOM05D000651 ORTHO05D003435 9.5e-06 53.5 63 46.0
Gorai.012G181600 Gossypium raimondii HOM05D000651 ORTHO05D003435 9.5e-06 53.5 66 40.9


User provided reference genes

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