Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 1.3e-201 706.1 332 100.0
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.8e-150 536.2 339 77.6
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.5e-136 490.0 324 69.8
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.2e-132 476.1 320 68.4
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.4e-128 461.1 326 63.5
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.6e-127 459.9 322 64.0
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 2.8e-127 459.1 322 64.3
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.8e-127 459.1 322 64.3
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.8e-126 456.4 322 63.4
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.8e-126 456.4 316 65.8
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 3.1e-126 455.7 313 64.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 4.0e-126 455.3 323 63.2
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 5.3e-126 454.9 318 65.4
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 6.9e-126 454.5 316 63.3
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 6.9e-126 454.5 310 66.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 6.9e-126 454.5 315 64.4
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 9.0e-126 454.1 317 64.4
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.2e-125 453.8 316 63.6
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 1.2e-125 453.8 328 62.2
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.5e-125 453.4 323 62.8
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 2.0e-125 453.0 319 63.6
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 4.5e-125 451.8 315 64.8
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 4.5e-125 451.8 313 64.5
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 5.8e-125 451.4 315 64.1
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.3e-124 450.3 316 63.0
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 1.7e-124 449.9 319 64.3
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.2e-124 449.5 313 62.3
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 3.8e-124 448.7 308 63.6
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 4.9e-124 448.4 319 62.7
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.1e-123 447.2 318 63.2
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.1e-123 447.2 313 63.9
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.4e-123 446.8 309 64.4
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 3.2e-123 445.7 319 62.4
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 4.2e-123 445.3 322 61.8
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 5.5e-123 444.9 323 61.3
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 5.5e-123 444.9 320 62.8
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.1e-123 444.5 313 63.3
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 7.1e-123 444.5 319 62.4
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 2.1e-122 443.0 318 62.6
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.5e-122 442.2 318 63.8
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 4.6e-122 441.8 319 61.8
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 4.6e-122 441.8 322 61.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 4.6e-122 441.8 322 63.4
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 6.0e-122 441.4 313 63.3
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 7.9e-122 441.0 304 65.8
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.0e-121 440.7 318 62.9
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.8e-121 439.9 318 62.9
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 5.1e-121 438.3 307 63.8
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.1e-120 437.2 320 61.6
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.5e-120 436.0 309 61.8
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.5e-120 436.0 312 64.1
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.5e-120 436.0 316 61.1
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 3.3e-120 435.6 320 62.2
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.3e-120 435.6 320 62.2
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 4.3e-120 435.3 323 60.4
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 4.3e-120 435.3 325 60.6
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.3e-119 433.7 317 61.2
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.6e-119 433.3 323 60.4
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.1e-119 433.0 315 61.3
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 2.1e-119 433.0 318 61.6
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.8e-119 432.6 318 61.6
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.7e-119 432.2 319 62.4
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 3.7e-119 432.2 318 61.6
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.8e-119 431.8 316 61.1
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 6.2e-119 431.4 308 63.3
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 8.2e-119 431.0 316 61.4
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 8.2e-119 431.0 315 61.3
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.1e-118 430.6 321 59.2
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.8e-118 429.9 309 62.1
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 1.8e-118 429.9 316 63.0
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.8e-118 429.9 313 62.3
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 1.8e-118 429.9 323 58.5
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 1.8e-118 429.9 313 62.9
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 5.3e-118 428.3 319 60.2
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 6.9e-118 427.9 309 61.8
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 6.9e-118 427.9 309 63.4
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 9.0e-118 427.6 308 62.3
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-117 427.2 323 60.4
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.5e-117 426.8 316 60.4
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 2.0e-117 426.4 318 60.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.6e-117 426.0 316 61.1
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.6e-117 426.0 308 62.7
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 3.4e-117 425.6 308 62.7
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 3.4e-117 425.6 316 61.1
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 4.5e-117 425.2 316 60.8
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 5.8e-117 424.9 308 62.7
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 5.8e-117 424.9 311 62.7
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 5.8e-117 424.9 315 61.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.0e-116 424.1 308 62.7
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.0e-116 424.1 321 61.4
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.3e-116 423.7 311 60.8
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.7e-116 423.3 308 62.7
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.2e-116 422.9 309 63.4
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 3.8e-116 422.2 308 62.3
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 6.5e-116 421.4 316 61.1
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 8.4e-116 421.0 315 60.3
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 8.4e-116 421.0 309 61.5
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 1.1e-115 420.6 307 60.3
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.4e-115 420.2 320 59.1
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.9e-115 419.9 308 62.0
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.9e-115 419.9 306 61.1
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.9e-115 419.9 323 57.9
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.5e-115 419.5 307 60.9
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 3.2e-115 419.1 319 58.9
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.2e-115 418.7 318 61.0
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 5.5e-115 418.3 308 61.4
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 5.5e-115 418.3 310 60.0
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 9.3e-115 417.5 308 61.4
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 9.3e-115 417.5 318 59.4
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.2e-114 417.2 315 59.4
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 1.6e-114 416.8 313 59.4
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.3e-113 412.9 317 59.9
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.0e-113 412.5 308 62.0
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.7e-112 408.3 319 61.4
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 7.4e-112 407.9 318 59.1
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 7.4e-112 407.9 307 59.0
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 4.8e-111 405.2 311 59.5
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.2e-111 404.4 286 62.9
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.8e-110 403.3 286 62.9
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.3e-110 401.7 322 58.7
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 3.4e-109 399.1 307 57.7
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 5.9e-109 398.3 308 60.4
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.2e-108 396.4 305 57.7
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.8e-108 395.6 322 58.1
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.0e-108 395.2 315 55.2
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.5e-108 394.8 297 61.3
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.4e-107 393.7 307 58.0
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.2e-107 392.1 304 58.9
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 2.7e-106 389.4 322 56.2
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.5e-104 383.6 319 55.5
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 2.2e-103 379.8 292 59.6
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 2.8e-103 379.4 322 55.3
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 4.2e-99 365.5 274 58.8
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.3e-96 355.9 308 54.5
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.3e-96 355.9 296 58.8
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 5.9e-93 345.1 307 53.1
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.9e-92 342.8 315 52.4
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.9e-92 342.8 315 52.4
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 6.1e-82 308.5 316 48.7
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.5e-80 303.9 299 52.5
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 6.3e-79 298.5 225 58.2
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.2e-77 294.3 220 59.1
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.2e-64 251.1 275 47.3
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 3.7e-63 246.1 183 61.7
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.5e-56 221.9 314 39.2
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.7e-52 210.7 265 44.9
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 2.4e-46 190.3 322 36.3
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.1e-42 177.2 127 62.2
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 8.9e-41 171.8 299 34.8
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.6e-40 170.2 129 58.9
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.5e-40 168.7 114 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 1.2e-32 144.8 242 38.0
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.2e-30 135.2 96 58.3
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 2.1e-29 134.0 345 29.9
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.2e-15 87.4 54 70.4
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.2e-07 60.8 74 44.6


User provided reference genes

Program Settings