Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.3e-137 492.3 252 100.0
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.1e-120 436.8 252 88.5
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.0e-105 387.1 248 81.0
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.8e-94 349.7 249 72.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 5.3e-94 348.2 249 71.1
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.9e-94 347.8 250 71.2
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 6.9e-94 347.8 250 71.2
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 7.6e-93 344.4 246 71.1
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.9e-93 344.0 249 69.9
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 2.2e-92 342.8 246 69.9
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.9e-92 342.4 250 70.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 2.9e-92 342.4 249 70.7
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 3.8e-92 342.0 250 70.4
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.8e-92 342.0 250 71.2
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.9e-92 341.7 246 70.7
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 6.4e-92 341.3 246 71.1
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 8.4e-92 340.9 246 70.7
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 8.4e-92 340.9 250 70.4
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 8.4e-92 340.9 246 69.5
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.1e-91 340.5 246 70.3
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-91 340.1 246 70.3
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.4e-91 340.1 252 68.7
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.9e-91 339.7 250 70.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.9e-91 339.7 246 68.7
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 2.5e-91 339.3 250 68.8
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 5.5e-91 338.2 252 67.1
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 7.1e-91 337.8 246 68.3
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 7.1e-91 337.8 249 69.5
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 9.3e-91 337.4 252 69.0
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 9.3e-91 337.4 246 69.1
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.2e-90 337.0 246 68.3
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.6e-90 336.7 246 70.3
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.6e-90 336.7 247 70.4
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 3.5e-90 335.5 246 69.1
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 3.5e-90 335.5 250 68.4
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 4.6e-90 335.1 247 69.2
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 4.6e-90 335.1 246 68.3
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.0e-90 334.7 250 68.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 6.0e-90 334.7 249 67.5
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 6.0e-90 334.7 245 67.3
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 6.0e-90 334.7 245 69.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 6.0e-90 334.7 249 68.7
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 7.9e-90 334.3 249 68.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.0e-89 334.0 249 67.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.3e-89 333.6 249 67.5
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.8e-89 333.2 245 68.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.8e-89 333.2 245 68.2
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.8e-89 333.2 246 69.5
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.8e-89 333.2 246 67.1
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.3e-89 332.8 246 68.3
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.0e-89 332.4 245 67.8
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 8.7e-89 330.9 246 68.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.1e-88 330.5 245 69.4
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.5e-88 330.1 249 66.7
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.9e-88 329.7 246 66.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 2.5e-88 329.3 246 67.9
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.3e-88 328.9 246 68.7
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.3e-88 328.6 246 67.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 7.4e-88 327.8 246 67.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 7.4e-88 327.8 258 67.1
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 9.6e-88 327.4 237 68.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.3e-87 327.0 246 66.7
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.6e-87 326.6 251 67.7
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.6e-87 326.6 245 67.8
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.8e-87 325.9 250 64.4
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.7e-87 325.5 236 68.6
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.8e-87 325.1 246 68.3
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 8.2e-87 324.3 246 66.3
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 8.2e-87 324.3 246 66.3
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-86 323.9 249 65.1
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 3.1e-86 322.4 286 60.5
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 6.9e-86 321.2 249 64.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-85 320.5 250 66.0
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.5e-85 320.1 246 65.0
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.5e-85 320.1 236 69.1
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.5e-85 320.1 248 67.7
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 3.4e-85 318.9 266 63.5
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 4.5e-85 318.5 249 63.1
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 5.8e-85 318.2 246 65.0
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 5.8e-85 318.2 249 63.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.8e-85 318.2 246 65.0
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.0e-84 317.4 250 66.4
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.0e-84 317.4 232 69.0
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 1.0e-84 317.4 230 68.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.7e-84 316.6 249 63.1
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.7e-84 316.6 246 64.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.7e-84 316.6 249 65.5
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 2.9e-84 315.8 213 73.7
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.9e-84 315.1 252 65.9
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-83 312.8 249 62.2
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 2.5e-83 312.8 249 61.4
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.2e-83 312.0 213 72.8
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 4.2e-83 312.0 246 63.4
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.5e-83 311.6 249 62.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 7.1e-83 311.2 249 62.2
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 7.1e-83 311.2 230 69.6
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 9.3e-83 310.8 249 61.8
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-82 310.1 246 66.3
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.1e-82 309.7 213 72.3
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 2.1e-82 309.7 249 65.1
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 2.7e-82 309.3 259 61.8
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 3.5e-82 308.9 246 64.2
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 3.5e-82 308.9 246 64.2
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.5e-82 308.9 260 61.5
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 3.5e-82 308.9 214 71.0
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.5e-82 308.9 263 62.7
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 6.0e-82 308.1 246 63.4
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 6.0e-82 308.1 246 63.8
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 7.9e-82 307.8 232 68.1
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.3e-81 307.0 213 71.4
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.3e-81 306.2 249 61.4
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.9e-81 305.4 229 69.0
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.1e-80 303.9 215 70.7
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.5e-80 302.8 280 57.9
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.3e-80 302.4 271 59.8
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 5.7e-80 301.6 320 54.4
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.1e-78 297.4 246 62.2
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.9e-78 294.7 264 58.3
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.0e-76 290.8 249 63.5
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.5e-75 286.2 252 60.3
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 2.5e-75 286.2 249 60.2
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.1e-74 283.1 246 60.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 6.1e-74 281.6 250 57.2
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 7.9e-74 281.2 217 65.0
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.3e-73 279.6 204 66.7
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 7.4e-72 274.6 245 62.0
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 3.4e-69 265.8 238 56.7
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 7.7e-69 264.6 245 53.9
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 7.7e-69 264.6 244 58.2
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.0e-68 264.2 250 54.4
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.7e-68 263.5 184 72.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.2e-68 263.1 244 55.7
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.8e-68 262.3 247 57.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.8e-68 262.3 204 64.7
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 7.2e-67 258.1 245 54.3
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.6e-66 255.8 259 56.4
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.6e-66 255.8 196 68.9
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 6.7e-65 251.5 180 68.9
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.5e-64 250.4 254 53.1
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.4e-64 248.8 235 54.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.7e-64 248.4 307 47.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.8e-63 246.1 245 56.3
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.1e-62 244.2 183 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.5e-59 233.0 245 50.2
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 4.2e-59 232.3 183 61.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-57 226.9 250 49.2
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.8e-55 218.8 147 75.5
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.4e-51 204.5 207 55.6
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 3.6e-50 202.6 246 45.9
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 3.4e-48 196.1 141 68.8
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 5.7e-48 195.3 236 44.9
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.0e-45 186.8 187 54.0
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.2e-43 179.5 122 71.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.1e-42 176.8 166 57.2
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.2e-34 151.0 148 56.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.6e-34 150.6 105 72.4
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 8.9e-33 144.8 104 70.2
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 9.8e-32 141.4 100 73.0
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 5.0e-28 129.0 242 36.4
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 3.1e-25 119.8 99 65.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 3.7e-23 112.8 118 50.0
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 3.7e-23 112.8 118 50.0
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 3.5e-21 106.3 82 63.4
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 8.0e-18 95.1 288 28.8
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-17 94.7 77 59.7
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.1e-17 94.7 157 43.9
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.2e-16 91.3 161 39.1
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-15 87.8 85 52.9
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.6e-13 79.3 68 58.8
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 1.0e-12 78.2 97 42.3
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.8e-10 70.1 64 57.8
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 1.3e-07 61.2 188 26.1
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.4e-06 57.0 121 37.2


User provided reference genes

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