Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 0.0e+00 1788.1 917 100.0
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 0.0e+00 1397.1 931 76.8
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 3.6e-217 759.2 869 49.3
HPP92_011748 Vanilla planifolia HOM05D011398 ORTHO05D007243 2.5e-194 683.3 653 55.6
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.4e-149 534.6 790 39.5
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.1e-138 498.4 804 37.9
Pp3c19_7090 Physcomitrium patens HOM05D011398 ORTHO05D007243 2.2e-129 467.6 817 36.8
SMO340G0064 Selaginella moellendorffii HOM05D011398 ORTHO05D007243 1.2e-119 435.3 417 52.5
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.3e-118 431.8 539 42.7
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.1e-91 340.9 480 39.4
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.1e-85 322.4 549 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 4.4e-74 283.9 615 32.8
SEGI_07802 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 8.7e-62 243.0 169 65.7
SEGI_00057 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 9.9e-58 229.6 196 56.1
Zm00001eb283170 Zea mays HOM05D000591 ORTHO05D007243 1.3e-52 212.6 98 99.0
Zm00001eb132950 Zea mays HOM05D000591 ORTHO05D007243 6.2e-52 210.3 98 98.0
HPP92_011769 Vanilla planifolia HOM05D011398 ORTHO05D007243 5.7e-45 187.2 129 69.0
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.6e-44 185.7 374 35.6
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 3.7e-36 157.9 94 91.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.6e-31 142.5 197 42.1
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.1e-30 137.5 257 33.5
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 2.0e-29 135.6 151 47.0
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 2.6e-29 135.2 262 32.8
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 7.4e-29 133.7 156 42.9
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 9.7e-29 133.3 191 39.8
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 9.7e-29 133.3 178 44.4
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.3e-28 132.9 267 34.8
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.2e-28 132.1 156 42.9
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 2.2e-28 132.1 167 42.5
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 2.2e-28 132.1 265 34.7
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 2.8e-28 131.7 152 46.1
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 2.8e-28 131.7 143 44.8
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.1e-27 129.8 264 33.3
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.1e-27 129.8 143 45.5
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 1.4e-27 129.4 273 33.7
SMO197G0086 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 1.4e-27 129.4 230 37.8
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.8e-27 129.0 275 38.2
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 2.4e-27 128.6 146 44.5
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 2.4e-27 128.6 146 44.5
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 2.4e-27 128.6 158 43.0
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 4.1e-27 127.9 260 33.1
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 4.1e-27 127.9 268 31.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 5.3e-27 127.5 257 33.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.2e-26 126.3 143 44.1
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.5e-26 125.9 255 32.2
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.5e-26 125.9 159 40.9
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.0e-26 125.6 268 32.1
HPP92_011773 Vanilla planifolia HOM05D011398 ORTHO05D007243 2.0e-26 125.6 180 43.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 4.5e-26 124.4 141 44.7
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.5e-26 124.4 139 43.9
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.9e-26 124.0 259 30.9
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.9e-26 124.0 259 30.9
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 7.7e-26 123.6 254 32.7
SMO197G0005 Selaginella moellendorffii HOM05D011398 ORTHO05D007243 7.7e-26 123.6 209 38.3
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.0e-25 123.2 160 41.2
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.7e-25 122.5 143 41.3
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.7e-25 122.5 145 42.1
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 2.9e-25 121.7 150 40.7
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 3.8e-25 121.3 260 32.3
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 5.0e-25 120.9 171 39.8
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 5.0e-25 120.9 265 30.6
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 5.0e-25 120.9 143 42.7
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 6.5e-25 120.6 145 42.1
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.1e-24 119.8 163 39.9
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.5e-24 119.4 167 40.1
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.9e-24 119.0 324 32.1
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.5e-24 118.6 160 40.0
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 3.2e-24 118.2 178 37.1
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.2e-24 118.2 171 39.2
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 3.2e-24 118.2 144 41.0
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 4.2e-24 117.9 153 40.5
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.2e-24 117.9 190 39.5
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 5.5e-24 117.5 189 36.0
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 5.5e-24 117.5 322 32.0
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 5.5e-24 117.5 188 38.8
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 5.5e-24 117.5 153 39.2
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 7.2e-24 117.1 183 39.3
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 9.4e-24 116.7 160 39.4
SEGI_00619 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 9.4e-24 116.7 109 52.3
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.6e-23 115.9 160 38.8
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.6e-23 115.9 151 41.1
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.1e-23 115.5 155 40.6
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.1e-23 115.5 155 40.6
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.1e-23 115.5 155 40.6
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 2.1e-23 115.5 193 35.2
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 2.7e-23 115.2 162 35.8
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 3.6e-23 114.8 169 39.6
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 3.6e-23 114.8 172 38.4
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 3.6e-23 114.8 143 40.6
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 6.1e-23 114.0 263 29.3
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 6.1e-23 114.0 284 29.9
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 6.1e-23 114.0 179 39.1
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.8e-22 112.5 139 39.6
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.8e-22 112.5 260 29.2
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.0e-22 111.7 144 38.2
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 3.9e-22 111.3 156 37.8
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.9e-22 111.3 143 37.1
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 5.2e-22 110.9 158 39.2
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 5.2e-22 110.9 158 39.2
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 5.2e-22 110.9 168 39.3
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.1e-21 109.8 156 37.2
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.5e-21 109.4 156 37.2
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.3e-21 108.2 255 29.0
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 4.4e-21 107.8 154 37.7
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 5.7e-21 107.5 270 31.5
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.2e-20 105.5 252 29.4
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 4.8e-20 104.4 146 37.0
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.4e-19 102.8 146 36.3
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 9.1e-19 100.1 238 29.0
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.6e-18 99.4 73 54.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 2.6e-18 98.6 114 43.9
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.5e-18 98.2 127 40.2
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 5.9e-18 97.4 76 53.9
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.3e-17 96.3 75 52.0
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.7e-17 95.9 75 52.0
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 2.2e-17 95.5 100 44.0
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 2.2e-17 95.5 190 30.5
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 3.8e-17 94.7 113 38.9
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 3.8e-17 94.7 72 50.0
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 3.8e-17 94.7 72 51.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 6.5e-17 94.0 193 31.1
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 6.5e-17 94.0 186 31.2
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.1e-16 93.2 185 33.5
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.9e-16 92.4 206 32.0
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 3.2e-16 91.7 197 29.4
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 4.2e-16 91.3 185 30.8
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 9.4e-16 90.1 111 43.2
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 1.6e-15 89.4 185 30.3
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 3.6e-15 88.2 180 31.7
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.4e-14 86.3 146 36.3
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 2.6e-13 82.0 310 25.5
SMO364G0606 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 4.4e-13 81.3 325 29.2
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.7e-10 72.0 114 36.0
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 2.7e-10 72.0 190 27.9
Sed0013649 Sechium edule HOM05D003825 ORTHO05D004491 3.8e-09 68.2 321 24.9
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.1e-08 66.6 54 48.1
SMO364G0290 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 3.2e-08 65.1 212 28.3
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 7.2e-08 63.9 81 42.0
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.1e-07 62.4 277 23.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.1e-07 62.4 354 23.7
arahy.Tifrunner.gnm1.ann1.SA4SRM Arachis hypogaea HOM05D003825 ORTHO05D004491 3.6e-07 61.6 199 27.1
MSTRG.20087 Avicennia marina HOM05D003825 ORTHO05D004491 6.1e-07 60.8 197 27.4
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 8.0e-07 60.5 208 26.9
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 1.0e-06 60.1 323 24.8
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 3.0e-06 58.5 320 25.9
Lalb_Chr08g0246621 Lupinus albus HOM05D003825 ORTHO05D004491 3.0e-06 58.5 199 27.6
SGA_v2.0_scaffold58G20541 Striga asiatica HOM05D003825 ORTHO05D004491 5.2e-06 57.8 199 26.6
Rhsim11G0176400 Rhododendron simsii HOM05D003825 ORTHO05D004491 6.8e-06 57.4 199 26.1
TWI75G0614 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 6.8e-06 57.4 330 25.5
unitig_60.g25447 Utricularia gibba HOM05D003825 ORTHO05D004491 6.8e-06 57.4 224 26.3
arahy.Tifrunner.gnm1.ann1.VS3LYX Arachis hypogaea HOM05D003825 ORTHO05D004491 8.8e-06 57.0 197 27.4
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 8.8e-06 57.0 214 24.3
Manes.17G100500 Manihot esculenta HOM05D003825 ORTHO05D004491 8.8e-06 57.0 199 26.6
SalBow6G4765 Salvia bowleyana HOM05D003825 ORTHO05D004491 8.8e-06 57.0 211 26.1
SalBow6G5747 Salvia bowleyana HOM05D003825 ORTHO05D004491 8.8e-06 57.0 211 26.1
SGA_v2.0_scaffold32G13163 Striga asiatica HOM05D003825 ORTHO05D004491 8.8e-06 57.0 199 26.6
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 8.8e-06 57.0 197 27.4


User provided reference genes

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