Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.1e-302 1041.6 535 100.0
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 8.3e-214 747.3 540 73.7
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 7.0e-112 408.7 568 46.1
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.5e-109 401.0 561 47.2
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 5.2e-107 392.5 568 46.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 8.8e-107 391.7 566 44.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 2.6e-106 390.2 547 45.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.8e-105 386.7 566 45.2
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.3e-105 385.2 574 44.3
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 5.4e-104 382.5 547 43.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 5.9e-103 379.0 569 44.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.0e-102 378.3 560 43.8
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.0e-102 378.3 561 45.6
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.0e-102 378.3 565 43.7
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.7e-102 377.5 546 44.5
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 8.6e-102 375.2 568 43.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 8.6e-102 375.2 562 43.6
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.1e-101 374.8 561 43.5
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 7.2e-101 372.1 555 44.0
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.2e-100 371.3 564 43.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 3.6e-100 369.8 566 44.0
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.7e-100 369.4 569 42.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 8.0e-100 368.6 561 43.7
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.4e-99 367.9 538 42.8
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.8e-99 367.5 570 43.7
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.3e-99 367.1 579 43.4
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.3e-99 367.1 558 42.7
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 5.2e-99 365.9 565 43.5
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 6.8e-99 365.5 561 43.5
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.2e-98 364.8 560 45.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.0e-98 364.0 571 43.1
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 3.4e-98 363.2 545 44.2
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 7.5e-98 362.1 547 43.9
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.8e-98 361.7 550 42.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.3e-97 361.3 559 43.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.3e-97 361.3 554 42.2
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.7e-97 360.9 563 44.6
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.7e-97 360.9 550 43.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.7e-97 360.9 555 41.6
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.2e-97 360.5 572 43.4
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 6.3e-97 359.0 556 42.6
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 6.3e-97 359.0 560 43.9
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.3e-97 359.0 545 43.7
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 8.3e-97 358.6 553 43.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 8.3e-97 358.6 549 42.8
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 8.3e-97 358.6 546 42.9
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.1e-96 358.2 563 42.1
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.1e-96 358.2 562 44.0
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.1e-96 358.2 564 44.1
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.8e-96 357.5 544 43.0
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.1e-96 356.7 564 43.3
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.1e-96 356.7 562 43.4
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.1e-96 356.3 552 42.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 9.2e-96 355.1 560 42.0
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.2e-95 354.8 572 42.3
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.7e-95 353.6 571 40.8
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 3.5e-95 353.2 558 41.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 7.8e-95 352.1 559 42.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 7.8e-95 352.1 550 42.0
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.0e-94 351.7 558 44.1
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.3e-94 351.3 566 42.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.7e-94 350.9 560 42.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 5.0e-94 349.4 558 43.9
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 8.6e-94 348.6 563 41.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 3.3e-93 346.7 555 42.5
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 3.3e-93 346.7 547 41.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.2e-92 344.7 543 44.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.6e-92 344.4 543 44.2
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 2.1e-92 344.0 559 40.6
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.8e-92 343.6 563 41.9
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.4e-91 341.3 549 42.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 5.8e-90 335.9 547 42.2
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 2.2e-89 334.0 568 42.4
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.9e-89 332.8 554 42.8
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 8.3e-89 332.0 599 40.2
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.9e-88 330.9 565 40.9
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.4e-88 330.5 603 38.1
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 5.4e-88 329.3 549 42.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 9.2e-88 328.6 552 41.8
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.6e-87 327.8 550 42.0
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.0e-87 327.4 576 39.4
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 2.7e-87 327.0 549 41.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 2.7e-87 327.0 566 42.0
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.3e-86 324.7 566 41.9
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.3e-86 324.7 466 45.3
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 5.0e-86 322.8 551 41.7
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.0e-86 322.8 575 39.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.5e-85 321.2 537 41.0
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.9e-85 320.9 554 40.6
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 5.6e-85 319.3 561 40.1
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 9.5e-85 318.5 555 41.1
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.7e-84 316.2 548 40.7
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 6.2e-84 315.8 568 40.0
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.1e-83 315.1 561 41.2
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.3e-83 313.9 548 41.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.4e-82 310.1 651 36.9
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.4e-82 310.1 499 43.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 4.4e-82 309.7 467 43.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 9.8e-82 308.5 474 42.6
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.2e-81 307.4 594 39.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.9e-81 306.2 546 41.8
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.1e-80 305.1 491 43.4
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.1e-79 300.8 456 42.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.7e-79 300.4 699 34.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 6.0e-79 299.3 553 39.2
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 7.8e-79 298.9 553 39.1
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.0e-78 297.0 692 34.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-77 295.0 559 39.2
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.5e-77 294.7 559 39.2
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.5e-77 294.7 559 39.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 2.3e-75 287.3 547 39.1
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 4.0e-75 286.6 542 39.3
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.4e-74 283.1 425 43.5
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.4e-67 260.8 367 45.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.4e-66 256.9 300 50.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 2.2e-65 254.2 582 37.3
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.3e-54 217.6 426 38.5
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.0e-46 192.2 217 50.7
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.3e-46 191.0 250 42.4
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.3e-38 165.2 462 31.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.0e-21 108.2 199 37.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.3e-20 105.5 193 34.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 3.1e-19 100.9 318 31.1
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.4e-18 97.4 200 34.5
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.4e-16 92.0 78 64.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 4.2e-16 90.5 167 32.9
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 7.9e-15 86.3 210 32.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.4e-13 80.5 138 45.7
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 7.0e-11 73.2 93 46.2
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 5.9e-10 70.1 88 44.3
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 5.0e-09 67.0 96 41.7
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-08 65.9 117 36.8
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 5.2e-06 57.0 79 38.0


User provided reference genes

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