Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.9e-145 519.2 284 100.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.5e-116 423.3 282 85.5
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.8e-98 363.2 290 76.2
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.2e-81 307.4 245 63.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.1e-77 292.0 245 62.9
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.3e-76 289.3 245 62.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-75 287.3 245 62.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 4.7e-75 285.4 245 62.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.2e-75 285.0 247 61.9
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 6.2e-75 285.0 243 61.3
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.4e-74 283.9 245 60.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.8e-74 281.6 244 59.8
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.2e-73 280.8 243 60.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-73 280.4 245 61.6
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.0e-73 280.0 245 62.0
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.0e-73 280.0 245 60.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.4e-73 279.3 245 60.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.4e-73 279.3 244 61.1
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.4e-73 278.9 245 61.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.4e-73 278.9 241 61.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.8e-73 278.5 244 59.8
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 7.6e-73 278.1 241 61.8
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.6e-73 278.1 243 58.4
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.9e-73 277.7 289 61.6
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.3e-72 277.3 243 60.1
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.2e-72 276.6 223 64.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 2.9e-72 276.2 244 59.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-72 275.8 245 60.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.9e-72 275.4 233 63.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.9e-72 275.4 245 59.2
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.9e-72 275.4 243 58.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.4e-72 275.0 245 59.2
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.9e-71 273.5 241 61.4
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.9e-71 273.5 241 61.4
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.4e-71 273.1 289 62.3
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 2.4e-71 273.1 235 60.4
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 4.1e-71 272.3 243 59.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.1e-71 272.3 243 59.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.1e-71 272.3 243 59.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.1e-71 272.3 245 58.4
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 5.4e-71 271.9 231 61.0
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.1e-71 271.6 245 59.6
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.2e-70 270.8 244 58.2
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.1e-70 270.0 245 60.0
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.7e-70 269.6 243 60.5
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.5e-70 269.2 266 56.0
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.6e-70 268.9 243 57.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.0e-70 268.5 244 59.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.0e-70 268.5 243 60.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-69 267.7 255 57.3
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.3e-69 267.3 232 59.9
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.7e-69 266.9 245 56.3
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.3e-69 266.5 245 58.0
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 5.1e-69 265.4 250 58.8
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 5.1e-69 265.4 250 58.8
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.1e-69 265.4 241 60.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.6e-69 265.0 233 59.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.9e-68 263.5 248 59.3
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.9e-68 263.5 242 58.3
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 9.6e-68 261.2 248 59.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-67 260.8 246 59.3
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-67 260.8 245 56.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 2.1e-67 260.0 239 59.0
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 3.6e-67 259.2 250 57.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 4.7e-67 258.8 247 57.1
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 4.7e-67 258.8 240 58.3
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.4e-66 257.3 248 58.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.4e-66 257.3 240 57.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.4e-66 256.5 248 56.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.1e-66 256.1 245 58.0
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.1e-66 256.1 240 58.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.1e-66 256.1 246 58.1
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.1e-66 256.1 244 58.6
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 3.1e-66 256.1 239 57.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.2e-66 255.4 248 57.7
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 6.8e-66 255.0 243 58.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.5e-65 253.8 248 56.9
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.5e-65 253.8 245 56.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.0e-65 253.4 248 56.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.6e-65 253.1 244 56.1
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 5.8e-65 251.9 244 57.4
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 9.9e-65 251.1 288 59.7
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.3e-64 250.8 248 58.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.2e-64 250.0 249 55.8
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.9e-64 249.6 249 55.4
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 2.9e-64 249.6 233 55.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.4e-64 248.4 248 58.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.1e-63 247.7 246 56.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.9e-63 246.9 251 55.4
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.9e-63 246.9 245 57.6
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.4e-63 246.5 245 55.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.2e-62 244.2 266 53.0
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.6e-62 243.8 228 58.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 4.6e-62 242.3 211 62.1
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.8e-62 241.5 247 56.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 7.8e-62 241.5 301 48.5
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.0e-61 241.1 232 55.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.1e-61 238.8 243 53.9
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-60 237.7 279 49.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 7.3e-60 235.0 246 53.3
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 3.6e-59 232.6 213 59.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 4.8e-59 232.3 252 53.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 8.1e-59 231.5 220 56.4
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 8.1e-59 231.5 231 54.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.4e-58 229.9 230 56.5
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.2e-57 227.6 251 53.0
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-57 226.5 238 54.6
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-57 226.5 241 54.4
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.4e-57 226.1 240 52.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 4.4e-57 225.7 255 52.9
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 5.8e-57 225.3 253 53.0
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.9e-56 223.0 235 54.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 3.8e-56 222.6 235 54.5
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 8.4e-56 221.5 204 57.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.1e-55 221.1 233 54.5
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.1e-55 221.1 228 53.1
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.1e-54 216.9 234 53.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 4.6e-54 215.7 233 53.6
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 2.3e-53 213.4 237 50.2
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.6e-51 207.2 240 52.5
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 4.8e-51 205.7 241 51.5
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.0e-50 202.6 237 49.4
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.8e-48 196.1 191 56.5
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.9e-48 195.7 241 49.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 7.1e-47 191.8 183 58.5
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.3e-45 187.6 183 56.8
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 8.7e-45 184.9 211 48.3
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.5e-44 184.1 203 54.2
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.8e-42 177.2 180 53.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 2.4e-42 176.8 202 48.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.3e-40 171.0 239 46.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.5e-32 141.7 252 41.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-28 131.3 238 39.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 7.4e-28 128.6 134 52.2
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 9.7e-28 128.3 150 49.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 5.3e-26 122.5 265 37.7
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.2e-24 117.1 253 37.2
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-23 114.8 224 37.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.1e-23 114.8 242 36.4
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.2e-22 111.3 229 39.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.7e-22 110.2 189 42.3
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.6e-22 109.8 231 35.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.0e-21 108.2 231 37.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.0e-21 106.7 226 36.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.0e-20 104.0 202 36.6
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.3e-20 102.8 246 35.0
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.8e-19 99.4 228 34.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.8e-18 97.4 52 82.7
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 6.9e-18 95.5 225 35.6
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.0e-17 94.0 229 32.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.0e-17 94.0 229 33.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.4e-17 93.2 242 32.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.9e-16 90.1 270 33.7
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 3.8e-16 89.7 241 32.8
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.5e-16 89.0 225 34.7
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.4e-15 87.8 226 34.1
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.1e-14 84.0 173 38.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.4e-13 81.3 267 29.2
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.1e-12 78.2 59 61.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.4e-12 76.3 58 62.1
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.2e-11 73.9 51 62.7
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.3e-11 72.4 194 35.1
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 5.3e-10 69.3 245 29.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.0e-09 67.4 143 33.6
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.2e-07 60.1 52 50.0
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.1e-06 57.4 51 49.0
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 4.7e-06 56.2 240 25.4
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.0e-06 55.5 32 65.6


User provided reference genes

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