Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 5.4e-93 344.4 180 100.0
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.2e-77 291.6 176 83.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.0e-59 232.3 164 66.5
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 4.4e-58 228.4 165 63.6
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.4e-58 228.4 164 65.2
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 5.7e-58 228.0 164 64.6
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 9.7e-58 227.3 160 65.6
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.8e-57 225.7 164 65.9
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 4.8e-57 224.9 164 65.9
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 4.8e-57 224.9 164 65.2
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 6.3e-57 224.6 164 64.0
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.4e-56 223.4 164 64.0
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.8e-56 223.0 164 62.8
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-56 223.0 168 61.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.4e-56 222.6 164 65.9
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.4e-56 222.6 164 65.9
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 3.1e-56 222.2 164 63.4
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.1e-56 221.9 164 62.8
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 6.9e-56 221.1 164 61.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 9.1e-56 220.7 164 62.8
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.5e-55 219.9 164 64.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.5e-55 219.9 164 64.0
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 2.0e-55 219.5 164 62.8
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.0e-55 219.5 168 60.7
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.6e-55 219.2 165 64.8
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.6e-55 219.2 165 64.8
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 3.4e-55 218.8 164 60.4
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 4.5e-55 218.4 164 63.4
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 5.9e-55 218.0 164 62.8
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.9e-55 218.0 162 63.0
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.7e-55 217.6 164 61.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 7.7e-55 217.6 164 64.0
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 7.7e-55 217.6 164 64.6
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-54 217.2 164 62.2
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.0e-54 217.2 164 64.0
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.3e-54 216.9 164 61.6
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 2.2e-54 216.1 165 60.0
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.2e-54 216.1 164 60.4
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.9e-54 215.7 164 62.2
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 3.8e-54 215.3 164 60.4
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 5.0e-54 214.9 164 59.1
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 5.0e-54 214.9 164 60.4
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 5.0e-54 214.9 164 61.0
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 6.5e-54 214.5 164 61.6
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 6.5e-54 214.5 164 61.6
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 8.5e-54 214.2 164 59.8
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 8.5e-54 214.2 156 64.1
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 8.5e-54 214.2 164 59.8
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 8.5e-54 214.2 164 62.8
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 1.1e-53 213.8 164 61.6
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.4e-53 213.4 164 59.1
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.4e-53 213.4 164 60.4
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 1.9e-53 213.0 164 61.6
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 59.8
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 59.8
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 59.8
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 60.4
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 58.5
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.5e-53 212.6 164 58.5
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 3.2e-53 212.2 164 58.5
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 3.2e-53 212.2 164 58.5
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.2e-53 212.2 164 59.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 3.2e-53 212.2 164 61.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.2e-53 212.2 164 59.8
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 4.2e-53 211.8 164 61.0
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.5e-53 211.5 164 57.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 7.2e-53 211.1 164 57.9
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 7.2e-53 211.1 164 58.5
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 7.2e-53 211.1 166 59.0
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 7.2e-53 211.1 166 59.6
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 9.4e-53 210.7 164 59.1
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 9.4e-53 210.7 164 57.3
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 9.4e-53 210.7 164 60.4
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 9.4e-53 210.7 164 61.6
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.2e-52 210.3 164 60.4
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.2e-52 210.3 164 61.6
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.6e-52 209.9 164 61.0
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 2.7e-52 209.1 164 56.7
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 2.7e-52 209.1 164 61.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 4.7e-52 208.4 164 59.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 6.1e-52 208.0 164 61.6
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 6.1e-52 208.0 162 60.5
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 6.1e-52 208.0 164 58.5
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 7.9e-52 207.6 164 59.1
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.0e-51 207.2 166 57.2
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.4e-51 206.8 164 58.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.8e-51 206.5 164 56.7
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.8e-51 206.5 164 57.3
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 2.3e-51 206.1 164 57.3
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 2.3e-51 206.1 164 57.3
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 3.9e-51 205.3 173 56.1
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 6.7e-51 204.5 164 57.3
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.1e-50 203.8 156 60.3
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.1e-50 203.8 162 58.6
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 3.3e-50 202.2 188 52.7
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 4.4e-50 201.8 164 61.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 5.7e-50 201.4 170 58.8
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 9.7e-50 200.7 164 57.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 2.8e-49 199.1 164 56.1
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 8.2e-49 197.6 191 50.3
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.4e-48 196.8 164 54.9
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 3.1e-48 195.7 185 51.9
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 3.1e-48 195.7 193 51.3
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 2.6e-47 192.6 164 57.9
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.6e-47 192.6 164 53.7
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 7.7e-47 191.0 164 55.5
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 3.8e-46 188.7 171 53.8
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 8.8e-43 177.6 133 59.4
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.1e-40 169.1 164 55.5
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.7e-38 163.3 177 48.0
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.2e-38 162.9 170 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 4.2e-37 158.7 171 49.1
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 5.5e-37 158.3 221 43.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.7e-36 156.0 132 53.0
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.7e-36 155.2 180 47.2
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.8e-35 151.4 164 49.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 8.8e-35 151.0 117 63.2
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 7.5e-34 147.9 168 45.2
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.6e-31 140.2 168 45.8
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 7.2e-29 131.3 122 49.2
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 7.2e-29 131.3 125 54.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 4.0e-27 125.6 97 63.9
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 8.8e-27 124.4 81 72.8
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.6e-26 122.9 94 62.8
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 5.4e-24 115.2 81 67.9
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.6e-23 113.6 96 51.0
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 2.0e-23 113.2 89 62.9
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 4.5e-23 112.1 100 59.0
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 8.6e-22 107.8 119 44.5
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 3.3e-21 105.9 84 52.4
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 3.0e-19 99.4 64 70.3
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 6.8e-19 98.2 98 57.1
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 5.4e-16 88.6 120 35.8
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.0e-14 84.3 57 54.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 5.0e-14 82.0 78 50.0
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 8.6e-14 81.3 78 44.9
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-12 76.6 51 68.6
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.4e-10 69.3 46 67.4
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.3e-09 67.4 77 50.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 6.4e-09 65.1 47 53.2
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 7.0e-08 61.6 48 47.9
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.5e-07 59.3 46 47.8
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 6.0e-07 58.5 48 60.4
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 3.0e-06 56.2 51 54.9


User provided reference genes

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