Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb173680 Zea mays HOM05D000134 ORTHO05D012921 1.2e-64 249.6 121 100.0
Zm00001eb002470 Zea mays HOM05D000134 ORTHO05D000168 7.2e-41 170.6 93 90.3
Zm00001eb402510 Zea mays HOM05D000134 ORTHO05D000168 1.1e-36 156.8 93 81.7
Os03g0130900 Oryza sativa ssp. japonica HOM05D000134 ORTHO05D000168 4.7e-32 141.4 101 73.3
Solyc05g024290.3 Solanum lycopersicum HOM05D000134 ORTHO05D000168 5.1e-10 68.2 109 41.3
Sopen05g019190 Solanum pennellii HOM05D000134 ORTHO05D000168 5.1e-10 68.2 109 41.3
Migut.N02965 Erythranthe guttata HOM05D000134 ORTHO05D000168 1.1e-09 67.0 91 41.8
PGSC0003DMG400008506 Solanum tuberosum HOM05D000134 ORTHO05D000168 1.1e-09 67.0 112 40.2
Nitab4.5_0000849g0030 Nicotiana tabacum HOM05D000134 ORTHO05D000168 1.9e-09 66.2 108 39.8
Nitab4.5_0001037g0020 Nicotiana tabacum HOM05D000134 ORTHO05D000168 3.3e-09 65.5 111 40.5
Oeu026028.1 Olea europaea HOM05D000134 ORTHO05D000168 5.6e-09 64.7 87 42.5
Migut.O00322 Erythranthe guttata HOM05D000134 ORTHO05D000168 7.3e-09 64.3 91 39.6
CAN.G430.4 Capsicum annuum HOM05D000134 ORTHO05D000168 1.2e-08 63.5 110 39.1
Hund06114 Selenicereus undatus HOM05D000134 ORTHO05D000168 2.1e-08 62.8 110 35.5
AUR62005677 Chenopodium quinoa HOM05D000134 ORTHO05D000168 2.8e-08 62.4 107 39.3
AUR62028878 Chenopodium quinoa HOM05D000134 ORTHO05D000168 2.8e-08 62.4 107 39.3
Ah.03g135840 Amaranthus hybridus HOM05D000134 ORTHO05D000168 3.6e-08 62.0 103 39.8
Peaxi162Scf00128g01633 Petunia axillaris HOM05D000134 ORTHO05D000168 4.7e-08 61.6 106 38.7
GSVIVG01000937001 Vitis vinifera HOM05D000134 ORTHO05D000168 4.7e-08 61.6 104 40.4
EL10Ac6g13561 Beta vulgaris HOM05D000134 ORTHO05D000168 6.2e-08 61.2 105 37.1
CANSAT01G1151 Cannabis sativa HOM05D000134 ORTHO05D000168 6.2e-08 61.2 104 35.6
HPP92_003501 Vanilla planifolia HOM05D000134 ORTHO05D000168 6.2e-08 61.2 85 41.2
Ah.02g131090 Amaranthus hybridus HOM05D000134 ORTHO05D000168 8.1e-08 60.8 103 39.8
AUR62040818 Chenopodium quinoa HOM05D000134 ORTHO05D000168 8.1e-08 60.8 63 54.0
Dinv12061 Davidia involucrata HOM05D000134 ORTHO05D000168 1.1e-07 60.5 105 38.1
CAN.G311.127 Capsicum annuum HOM05D000134 ORTHO05D000168 1.4e-07 60.1 93 40.9
Ciclev10001525m.g Citrus clementina HOM05D000134 ORTHO05D000168 1.8e-07 59.7 86 43.0
Hund25488 Selenicereus undatus HOM05D000134 ORTHO05D000168 1.8e-07 59.7 109 38.5
MSTRG.24498 Avicennia marina HOM05D000134 ORTHO05D000168 2.3e-07 59.3 91 37.4
CSS0034474 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 3.1e-07 58.9 108 38.0
AUR62035124 Chenopodium quinoa HOM05D000134 ORTHO05D000168 3.1e-07 58.9 62 51.6
Cc11_g17380 Coffea canephora HOM05D000134 ORTHO05D000168 4.0e-07 58.5 110 36.4
DCAR_026445 Daucus carota HOM05D000134 ORTHO05D000168 4.0e-07 58.5 125 34.4
Peaxi162Scf00064g01213 Petunia axillaris HOM05D000134 ORTHO05D000168 4.0e-07 58.5 103 35.9
PGR083G0645 Punica granatum HOM05D000134 ORTHO05D000168 4.0e-07 58.5 92 41.3
SalBow2G2801 Salvia bowleyana HOM05D000134 ORTHO05D000168 4.0e-07 58.5 109 35.8
THA.LOC104813752 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 4.0e-07 58.5 124 34.7
Actinidia09617 Actinidia chinensis HOM05D000134 ORTHO05D000168 5.2e-07 58.2 105 38.1
EL10Ac1g01931 Beta vulgaris HOM05D000134 ORTHO05D000168 5.2e-07 58.2 53 50.9
Hma1.2p1_0459F.1_g157340 Hydrangea macrophylla HOM05D000134 ORTHO05D000168 5.2e-07 58.2 110 37.3
MD16G1284800 Malus domestica HOM05D000134 ORTHO05D000168 5.2e-07 58.2 111 37.8
Hund28570 Selenicereus undatus HOM05D000134 ORTHO05D000168 5.2e-07 58.2 118 36.4
Hund28573 Selenicereus undatus HOM05D000134 ORTHO05D000168 5.2e-07 58.2 118 36.4
TAR371G1250 Trochodendron aralioides HOM05D000134 ORTHO05D000168 5.2e-07 58.2 105 38.1
Atru.chr13.126 Acer truncatum HOM05D000134 ORTHO05D000168 6.8e-07 57.8 93 40.9
Hma1.2p1_0507F.1_g168630 Hydrangea macrophylla HOM05D000134 ORTHO05D000168 6.8e-07 57.8 100 35.0
Hund07154 Selenicereus undatus HOM05D000134 ORTHO05D000168 6.8e-07 57.8 82 40.2
Ah.11g041570 Amaranthus hybridus HOM05D000134 ORTHO05D000168 8.9e-07 57.4 54 50.0
CANSAT25G0347 Cannabis sativa HOM05D000134 ORTHO05D000168 8.9e-07 57.4 75 38.7
Ciclev10031492m.g Citrus clementina HOM05D000134 ORTHO05D000168 8.9e-07 57.4 102 36.3
Haze_12464 Corylus avellana HOM05D000134 ORTHO05D000168 8.9e-07 57.4 104 34.6
Manes.13G007000 Manihot esculenta HOM05D000134 ORTHO05D000168 8.9e-07 57.4 103 37.9
Medtr3g115500 Medicago truncatula HOM05D000134 ORTHO05D000168 8.9e-07 57.4 105 36.2
Atru.chr11.2388_Atru.chr11.2389 Acer truncatum HOM05D000134 ORTHO05D000168 1.2e-06 57.0 105 35.2
MSTRG.982 Avicennia marina HOM05D000134 ORTHO05D000168 1.2e-06 57.0 99 35.4
BcaC05g25975 Brassica carinata HOM05D000134 ORTHO05D000168 1.2e-06 57.0 99 35.4
C05p19270 Brassica napus HOM05D000134 ORTHO05D000168 1.2e-06 57.0 99 35.4
BolC5t30628H Brassica oleracea HOM05D000134 ORTHO05D000168 1.2e-06 57.0 99 35.4
CiPaw.06G106400 Carya illinoinensis HOM05D000134 ORTHO05D000168 1.2e-06 57.0 108 34.3
Eucgr.B03535 Eucalyptus grandis HOM05D000134 ORTHO05D000168 1.2e-06 57.0 103 35.9
Glyma.08G360600 Glycine max HOM05D000134 ORTHO05D000168 1.2e-06 57.0 98 36.7
Sp3g22530 Schrenkiella parvula HOM05D000134 ORTHO05D000168 1.2e-06 57.0 84 38.1
SpUn0027_0010 Schrenkiella parvula HOM05D000134 ORTHO05D000168 1.2e-06 57.0 84 38.1
Sopen04g036130 Solanum pennellii HOM05D000134 ORTHO05D000168 1.2e-06 57.0 92 40.2
TAR629G0092 Trochodendron aralioides HOM05D000134 ORTHO05D000435 1.2e-06 57.0 105 36.2
CARHR021110 Cardamine hirsuta HOM05D000134 ORTHO05D000168 1.5e-06 56.6 92 39.1
CiPaw.05G105200 Carya illinoinensis HOM05D000134 ORTHO05D000168 1.5e-06 56.6 108 35.2
ECA233G1655 Erigeron canadensis HOM05D000134 ORTHO05D000168 1.5e-06 56.6 112 34.8
Thhalv10002860m.g Eutrema salsugineum HOM05D000134 ORTHO05D000168 1.5e-06 56.6 86 39.5
Manes.12G006800 Manihot esculenta HOM05D000134 ORTHO05D000168 1.5e-06 56.6 105 35.2
Sabra08G0032800 Salix brachista HOM05D000134 ORTHO05D000168 1.5e-06 56.6 87 40.2
Solyc04g082510.3 Solanum lycopersicum HOM05D000134 ORTHO05D000168 1.5e-06 56.6 92 40.2
SGA_v2.0_scaffold364G49981 Striga asiatica HOM05D000134 ORTHO05D000168 1.5e-06 56.6 99 36.4
CiPaw.07G137200 Carya illinoinensis HOM05D000134 ORTHO05D000168 2.0e-06 56.2 119 33.6
MELO3C022340.2 Cucumis melo HOM05D000134 ORTHO05D000168 2.0e-06 56.2 102 31.4
CsaV3_6G007940 Cucumis sativus L. HOM05D000134 ORTHO05D000168 2.0e-06 56.2 102 31.4
Glyma.06G017500 Glycine max HOM05D000134 ORTHO05D000168 2.0e-06 56.2 100 37.0
RcHm_v2.0_Chr4g0429521 Rosa chinensis HOM05D000134 ORTHO05D000168 2.0e-06 56.2 110 34.5
SalBow2G3584 Salvia bowleyana HOM05D000168 ORTHO05D000811 2.0e-06 56.2 50 48.0
TWI36G0263 Tripterygium wilfordii HOM05D000134 ORTHO05D000168 2.0e-06 56.2 105 36.2
Actinidia08042 Actinidia chinensis HOM05D000134 ORTHO05D000168 2.6e-06 55.8 99 38.4
Aa31LG3G14500 Aethionema arabicum HOM05D000134 ORTHO05D000168 2.6e-06 55.8 106 32.1
Aa31sc95G60 Aethionema arabicum HOM05D000134 ORTHO05D000168 2.6e-06 55.8 81 38.3
Aqoxy6G01633 Aquilegia oxysepala HOM05D000134 ORTHO05D000168 2.6e-06 55.8 94 39.4
AL1G33610 Arabidopsis lyrata HOM05D000134 ORTHO05D000168 2.6e-06 55.8 53 50.9
AT1G20650 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 2.6e-06 55.8 53 50.9
BcaC07g39047 Brassica carinata HOM05D000134 ORTHO05D000168 2.6e-06 55.8 94 35.1
C08p20280 Brassica napus HOM05D000134 ORTHO05D000168 2.6e-06 55.8 94 35.1
BraA08t34865Z Brassica rapa HOM05D000134 ORTHO05D000168 2.6e-06 55.8 94 35.1
Carub.0006s1133 Capsella rubella HOM05D000134 ORTHO05D000168 2.6e-06 55.8 105 32.4
DCAR_024645 Daucus carota HOM05D000134 ORTHO05D012921 2.6e-06 55.8 106 36.8
Duzib251G0015 Durio zibethinus HOM05D000134 ORTHO05D000168 2.6e-06 55.8 104 35.6
Migut.K01020 Erythranthe guttata HOM05D000134 ORTHO05D000168 2.6e-06 55.8 105 36.2
FAN07G1781 Fragaria x ananassa HOM05D000134 ORTHO05D000168 2.6e-06 55.8 110 34.5
FAN12G3475 Fragaria x ananassa HOM05D000134 ORTHO05D000168 2.6e-06 55.8 110 34.5
Phvul.009G011600 Phaseolus vulgaris HOM05D000134 ORTHO05D000168 2.6e-06 55.8 109 35.8
THA.LOC104807389 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 2.6e-06 55.8 105 33.3
THA.LOC104810211 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 2.6e-06 55.8 103 35.9
VMungo1309G2229 Vigna mungo HOM05D000134 ORTHO05D000168 2.6e-06 55.8 108 36.1
ATR0582G209 Amborella trichopoda HOM05D000134 ORTHO05D000168 3.4e-06 55.5 104 32.7
ATR0807G225 Amborella trichopoda HOM05D000134 ORTHO05D000168 3.4e-06 55.5 83 42.2
BcaB03g12859 Brassica carinata HOM05D000134 ORTHO05D000168 3.4e-06 55.5 94 35.1
BcaC06g34827 Brassica carinata HOM05D000134 ORTHO05D000168 3.4e-06 55.5 85 38.8
C07p22910 Brassica napus HOM05D000134 ORTHO05D000168 3.4e-06 55.5 85 38.8
BolC7t42830H Brassica oleracea HOM05D000134 ORTHO05D000168 3.4e-06 55.5 85 38.8
CSS0047239 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 3.4e-06 55.5 94 38.3
ClCG06G001890 Citrullus lanatus HOM05D000134 ORTHO05D000168 3.4e-06 55.5 104 32.7
Thhalv10013511m.g Eutrema salsugineum HOM05D000134 ORTHO05D000168 3.4e-06 55.5 104 32.7
Manes.05G131100 Manihot esculenta HOM05D000134 ORTHO05D000168 3.4e-06 55.5 95 36.8
Oeu001726.1 Olea europaea HOM05D000168 ORTHO05D000811 3.4e-06 55.5 50 48.0
Oeu011337.1 Olea europaea HOM05D000134 ORTHO05D000168 3.4e-06 55.5 109 38.5
Sp6g30820 Schrenkiella parvula HOM05D000134 ORTHO05D000168 3.4e-06 55.5 104 32.7
Sc04g0010430 Simmondsia chinensis HOM05D000134 ORTHO05D000168 3.4e-06 55.5 106 35.8
PGSC0003DMG400009986 Solanum tuberosum HOM05D000134 ORTHO05D000168 3.4e-06 55.5 91 37.4
Thecc.05G035300 Theobroma cacao HOM05D000026 ORTHO05D000094 3.4e-06 55.5 85 32.9
TAR622G0404 Trochodendron aralioides HOM05D000134 ORTHO05D000168 3.4e-06 55.5 123 33.3
MSTRG.8031 Avicennia marina HOM05D000134 ORTHO05D000168 4.4e-06 55.1 91 41.8
BcaNung01864 Brassica carinata HOM05D000134 ORTHO05D000168 4.4e-06 55.1 109 31.2
A08p29300 Brassica napus HOM05D000134 ORTHO05D000168 4.4e-06 55.1 94 35.1
C02p05910 Brassica napus HOM05D000134 ORTHO05D000168 4.4e-06 55.1 109 31.2
BolC2t06536H Brassica oleracea HOM05D000134 ORTHO05D000168 4.4e-06 55.1 109 31.2
CSS0000164 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 4.4e-06 55.1 107 34.6
CSS0025171 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 4.4e-06 55.1 107 34.6
Migut.L01467 Erythranthe guttata HOM05D000168 ORTHO05D000811 4.4e-06 55.1 58 41.4
Sed0026113 Sechium edule HOM05D000134 ORTHO05D000168 4.4e-06 55.1 104 32.7
Hund01771 Selenicereus undatus HOM05D000134 ORTHO05D012921 4.4e-06 55.1 63 47.6
SGA_v2.0_scaffold50G18427 Striga asiatica HOM05D000168 ORTHO05D000811 4.4e-06 55.1 50 46.0
THA.LOC104809109 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 4.4e-06 55.1 94 36.2
vmacro16088 Vaccinium macrocarpon HOM05D000134 ORTHO05D000168 4.4e-06 55.1 102 38.2
HPP92_002211 Vanilla planifolia HOM05D000013 ORTHO05D000011 4.4e-06 55.1 60 46.7
Actinidia30612 Actinidia chinensis HOM05D000134 ORTHO05D000168 5.8e-06 54.7 105 37.1
Aa31LG7G4870 Aethionema arabicum HOM05D000134 ORTHO05D000168 5.8e-06 54.7 53 52.8
Ah.06g188800 Amaranthus hybridus HOM05D000134 ORTHO05D000168 5.8e-06 54.7 78 34.6
arahy.Tifrunner.gnm1.ann1.7372KT Arachis hypogaea HOM05D000134 ORTHO05D000168 5.8e-06 54.7 119 32.8
arahy.Tifrunner.gnm1.ann1.NT7BTS Arachis hypogaea HOM05D000134 ORTHO05D000168 5.8e-06 54.7 119 32.8
A02p01700 Brassica napus HOM05D000134 ORTHO05D000168 5.8e-06 54.7 108 29.6
CAN.G208.35 Capsicum annuum HOM05D000134 ORTHO05D000168 5.8e-06 54.7 104 35.6
CiPaw.08G074400 Carya illinoinensis HOM05D000134 ORTHO05D000168 5.8e-06 54.7 102 36.3
Cc10_g00530 Coffea canephora HOM05D000134 ORTHO05D000168 5.8e-06 54.7 79 41.8
Thhalv10007921m.g Eutrema salsugineum HOM05D000134 ORTHO05D000168 5.8e-06 54.7 53 52.8
Oeu035048.2 Olea europaea HOM05D000134 ORTHO05D000168 5.8e-06 54.7 92 38.0
Thecc.02G198700 Theobroma cacao HOM05D000134 ORTHO05D000168 5.8e-06 54.7 104 35.6
AT5G13160 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 7.6e-06 54.3 106 33.0
A07p15550 Brassica napus HOM05D000134 ORTHO05D000168 7.6e-06 54.3 83 39.8
BraA02t05149Z Brassica rapa HOM05D000134 ORTHO05D000168 7.6e-06 54.3 108 31.5
Cfa014097 Carpinus fangiana HOM05D000046 ORTHO05D000452 7.6e-06 54.3 102 36.3
Dinv15269 Davidia involucrata HOM05D000168 ORTHO05D000811 7.6e-06 54.3 58 44.8
Duzib248G0182 Durio zibethinus HOM05D000134 ORTHO05D000168 7.6e-06 54.3 104 33.7
Duzib248G1629 Durio zibethinus HOM05D000168 ORTHO05D000811 7.6e-06 54.3 58 43.1
HanXRQChr13g0417941 Helianthus annuus HOM05D000134 ORTHO05D000168 7.6e-06 54.3 82 39.0
Nn6g31713 Nelumbo nucifera HOM05D000134 ORTHO05D000168 7.6e-06 54.3 105 36.2
Sc26g0004660 Simmondsia chinensis HOM05D000134 ORTHO05D000168 7.6e-06 54.3 58 46.6
THA.LOC104809811 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 7.6e-06 54.3 81 42.0
EL10Ac9g21238 Beta vulgaris HOM05D000134 ORTHO05D000168 9.9e-06 53.9 100 35.0
BcaNung01172 Brassica carinata HOM05D000134 ORTHO05D000168 9.9e-06 53.9 105 31.4
Cpa.g.sc26.183 Carica papaya HOM05D000134 ORTHO05D000168 9.9e-06 53.9 44 56.8
AUR62012911 Chenopodium quinoa HOM05D000134 ORTHO05D000168 9.9e-06 53.9 36 61.1
COL.COLO4_13225 Corchorus olitorius HOM05D000134 ORTHO05D000168 9.9e-06 53.9 104 31.7
DCAR_031121 Daucus carota HOM05D000168 ORTHO05D000811 9.9e-06 53.9 58 43.1
ECA238G0667 Erigeron canadensis HOM05D000134 ORTHO05D000168 9.9e-06 53.9 101 34.7
MD16G1097000 Malus domestica HOM05D000168 ORTHO05D000811 9.9e-06 53.9 58 41.4
Sabra03G0122300 Salix brachista HOM05D000134 ORTHO05D000168 9.9e-06 53.9 106 36.8
SalBow7G2746 Salvia bowleyana HOM05D000134 ORTHO05D000168 9.9e-06 53.9 39 64.1
Sp1g18370 Schrenkiella parvula HOM05D000134 ORTHO05D000168 9.9e-06 53.9 53 50.9


User provided reference genes

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