Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb171470 Zea mays HOM05D007295 ORTHO05D007705 9.2e-196 686.8 370 100.0
Zm00001eb063180 Zea mays HOM05D007295 ORTHO05D007705 8.6e-194 680.2 370 98.9
Zm00001eb367280 Zea mays HOM05D007295 ORTHO05D007705 2.1e-192 675.6 371 98.7
Zm00001eb401020 Zea mays HOM05D007295 ORTHO05D007705 2.1e-192 675.6 371 98.7
Zm00001eb010720 Zea mays HOM05D007295 ORTHO05D007705 1.4e-188 662.9 370 97.0
Zm00001eb024970 Zea mays HOM05D007295 ORTHO05D007705 4.3e-185 651.4 366 94.3
Zm00001eb237400 Zea mays HOM05D007295 ORTHO05D007705 4.3e-145 518.5 281 92.5
Zm00001eb086670 Zea mays HOM05D007295 ORTHO05D007705 2.2e-128 463.0 233 97.9
Zm00001eb331910 Zea mays HOM05D007295 ORTHO05D007705 8.2e-120 434.5 253 95.3
Zm00001eb273910 Zea mays HOM05D007295 ORTHO05D007705 1.6e-107 393.7 190 99.5
Zm00001eb283050 Zea mays HOM05D007295 ORTHO05D007705 2.5e-100 369.8 223 95.5
Zm00001eb048300 Zea mays HOM05D007295 ORTHO05D007705 8.6e-77 291.6 150 96.0
Os02g0813200 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.1e-75 287.0 397 46.9
Zm00001eb345330 Zea mays HOM05D007295 ORTHO05D007705 2.8e-75 286.6 159 95.6
Zm00001eb018820 Zea mays HOM05D007295 ORTHO05D007705 4.7e-75 285.8 374 46.3
Os06g0595700 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 4.0e-74 282.7 390 46.7
Zm00001eb279200 Zea mays HOM05D007295 ORTHO05D007705 4.0e-74 282.7 159 95.0
Zm00001eb090610 Zea mays HOM05D007295 ORTHO05D007705 1.2e-73 281.2 351 46.2
Zm00001eb197800 Zea mays HOM05D007295 ORTHO05D007705 5.4e-71 272.3 376 42.8
Zm00001eb133080 Zea mays HOM05D007295 ORTHO05D007705 1.1e-66 258.1 130 98.5
Zm00001eb390930 Zea mays HOM05D007295 ORTHO05D003458 1.4e-66 257.7 176 84.7
Zm00001eb279690 Zea mays HOM05D007295 ORTHO05D007705 1.2e-65 254.6 329 44.7
Zm00001eb236790 Zea mays HOM05D007295 ORTHO05D007705 2.9e-64 250.0 123 98.4
Zm00001eb391510 Zea mays HOM05D007295 ORTHO05D007705 3.5e-62 243.0 145 89.0
Zm00001eb004080 Zea mays HOM05D007295 ORTHO05D007705 6.6e-61 238.8 324 42.9
Zm00001eb300210 Zea mays HOM05D007295 ORTHO05D007705 3.6e-59 233.0 324 42.9
Zm00001eb117650 Zea mays HOM05D007295 ORTHO05D007705 5.8e-57 225.7 114 98.2
Zm00001eb392180 Zea mays HOM05D007295 ORTHO05D007705 6.4e-56 222.2 112 96.4
Zm00001eb270180 Zea mays HOM05D007295 ORTHO05D007705 1.3e-53 214.5 165 75.2
Zm00001eb384140 Zea mays HOM05D007295 ORTHO05D007705 2.3e-53 213.8 298 41.9
Os12g0299650 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.0e-53 213.4 326 46.3
Zm00001eb019020 Zea mays HOM05D007295 ORTHO05D007705 9.3e-47 191.8 204 50.0
Zm00001eb211670 Zea mays HOM05D007295 ORTHO05D007705 3.5e-46 189.9 259 40.9
Zm00001eb015410 Zea mays HOM05D007295 ORTHO05D007705 3.3e-44 183.3 445 30.8
Zm00001eb087940 Zea mays HOM05D007295 ORTHO05D007705 3.3e-44 183.3 166 50.6
Zm00001eb046270 Zea mays HOM05D007295 ORTHO05D007705 9.6e-44 181.8 166 50.0
Zm00001eb389250 Zea mays HOM05D007295 ORTHO05D007705 9.6e-44 181.8 166 50.0
Os11g0427500 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.6e-43 181.0 154 61.0
Zm00001eb242210 Zea mays HOM05D007295 ORTHO05D007705 1.6e-43 181.0 166 50.0
Os05g0218001 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.8e-43 180.3 221 45.7
Zm00001eb113300 Zea mays HOM05D007295 ORTHO05D007705 1.4e-42 177.9 205 46.3
Os06g0481800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.8e-41 172.6 186 47.8
Os01g0894050 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.7e-40 171.0 186 47.8
Zm00001eb379810 Zea mays HOM05D007295 ORTHO05D007705 3.5e-38 163.3 89 88.8
Zm00001eb121750 Zea mays HOM05D007295 ORTHO05D007705 5.1e-37 159.5 322 32.0
Zm00001eb424390 Zea mays HOM05D007295 ORTHO05D007705 2.0e-33 147.5 339 32.2
Zm00001eb086590 Zea mays HOM05D007295 ORTHO05D007705 3.8e-32 143.3 148 45.3
Os09g0292300 Oryza sativa ssp. japonica HOM05D000034 ORTHO05D007705 1.4e-31 141.4 139 49.6
Zm00001eb385640 Zea mays HOM05D007295 ORTHO05D007705 1.2e-30 138.3 234 35.0
Zm00001eb224540 Zea mays HOM05D007295 ORTHO05D007705 3.0e-29 133.7 234 38.5
Zm00001eb045190 Zea mays HOM05D007295 ORTHO05D007705 1.1e-28 131.7 239 35.1
Zm00001eb270430 Zea mays HOM05D007295 ORTHO05D007705 1.1e-28 131.7 149 45.6
Zm00001eb180320 Zea mays HOM05D007295 ORTHO05D007705 2.1e-27 127.5 252 35.3
Os04g0463600 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.8e-27 127.1 346 28.6
Zm00001eb412060 Zea mays HOM05D007295 ORTHO05D007705 6.3e-27 125.9 122 54.1
Zm00001eb390800 Zea mays HOM05D007295 ORTHO05D007705 3.1e-26 123.6 370 28.6
Zm00001eb129150 Zea mays HOM05D007295 ORTHO05D007705 6.9e-26 122.5 221 38.9
Zm00001eb386100 Zea mays HOM05D007295 ORTHO05D007705 5.9e-25 119.4 325 28.0
Os04g0422950 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.9e-23 114.4 97 52.6
Zm00001eb090020 Zea mays HOM05D007295 ORTHO05D007705 3.2e-23 113.6 141 38.3
Zm00001eb180120 Zea mays HOM05D007295 ORTHO05D007705 3.2e-23 113.6 141 38.3
Zm00001eb309640 Zea mays HOM05D007295 ORTHO05D007705 1.2e-22 111.7 62 85.5
Zm00001eb345220 Zea mays HOM05D007295 ORTHO05D007705 1.6e-22 111.3 91 50.5
Zm00001eb338830 Zea mays HOM05D007295 ORTHO05D007705 4.6e-22 109.8 128 43.0
Zm00001eb373830 Zea mays HOM05D007295 ORTHO05D007705 4.6e-22 109.8 141 39.7
Zm00001eb020010 Zea mays HOM05D007295 ORTHO05D007705 7.9e-22 109.0 134 38.8
Zm00001eb410270 Zea mays HOM05D007295 ORTHO05D007705 1.0e-21 108.6 78 84.6
Zm00001eb136070 Zea mays HOM05D007295 ORTHO05D007705 1.3e-21 108.2 85 51.8
Zm00001eb236750 Zea mays HOM05D007295 ORTHO05D007705 3.0e-21 107.1 127 42.5
Zm00001eb195990 Zea mays HOM05D007295 ORTHO05D441577 5.1e-21 106.3 84 97.6
Zm00001eb274350 Zea mays HOM05D007295 ORTHO05D007705 6.7e-21 105.9 127 41.7
Zm00001eb035520 Zea mays HOM05D011105 ORTHO05D007705 1.1e-20 105.1 331 25.4
Zm00001eb056170 Zea mays HOM05D007295 ORTHO05D007705 1.1e-20 105.1 205 34.6
Zm00001eb375080 Zea mays HOM05D007295 ORTHO05D007705 1.1e-20 105.1 127 41.7
Zm00001eb391340 Zea mays HOM05D007295 ORTHO05D007705 1.9e-20 104.4 209 34.4
Zm00001eb122800 Zea mays HOM05D007295 ORTHO05D007705 2.2e-19 100.9 125 38.4
Zm00001eb136260 Zea mays HOM05D007295 ORTHO05D007705 2.8e-19 100.5 324 25.6
Os09g0292400 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.7e-19 100.1 121 60.3
Os01g0548900 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.1e-18 98.6 99 52.5
Os05g0498800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.0e-17 94.4 105 47.6
Zm00001eb053070 Zea mays HOM05D007295 ORTHO05D446693 1.0e-16 92.0 62 95.2
Zm00001eb273930 Zea mays HOM05D007295 ORTHO05D444378 1.0e-16 92.0 62 95.2
Zm00001eb093810 Zea mays HOM05D007295 ORTHO05D007705 1.7e-16 91.3 334 24.3
Zm00001eb196690 Zea mays HOM05D007295 ORTHO05D007705 2.2e-16 90.9 384 23.7
Zm00001eb166860 Zea mays HOM05D007295 ORTHO05D007705 2.9e-16 90.5 181 34.3
Zm00001eb380560 Zea mays HOM05D007295 ORTHO05D007705 3.8e-16 90.1 65 61.5
Zm00001eb411270 Zea mays HOM05D007295 ORTHO05D007705 1.4e-15 88.2 111 43.2
Os03g0643100 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.9e-15 87.8 343 24.5
Os07g0115800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.9e-15 87.8 343 24.5
Os09g0122200 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.9e-15 87.8 343 25.1
Zm00001eb001660 Zea mays HOM05D007295 ORTHO05D007705 1.9e-15 87.8 133 33.8
Os10g0468301 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 3.2e-15 87.0 343 24.5
Os07g0210800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 9.4e-15 85.5 136 34.6
Zm00001eb079960 Zea mays HOM05D007295 ORTHO05D007705 1.0e-13 82.0 103 41.7
Zm00001eb389300 Zea mays HOM05D007295 ORTHO05D007705 1.1e-12 78.6 149 37.6
ATR0081G006 Amborella trichopoda HOM05D000665 ORTHO05D000140 1.3e-11 75.1 139 28.8
ATR0585G101 Amborella trichopoda HOM05D000665 ORTHO05D000140 2.2e-11 74.3 133 27.1
ATR0776G040 Amborella trichopoda HOM05D000665 ORTHO05D000140 2.8e-11 73.9 192 25.5
Prupe.1G367300 Prunus persica HOM05D000665 ORTHO05D003147 3.7e-11 73.6 363 26.4
CDE08G0696 Ceratophyllum demersum HOM05D000032 ORTHO05D007907 6.3e-11 72.8 132 28.8
MBI02_g21882_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 2.4e-10 70.9 126 28.6
GSVIVG01009883001 Vitis vinifera HOM05D000665 ORTHO05D003147 2.4e-10 70.9 304 23.7
FAN15G1296 Fragaria x ananassa HOM05D000665 ORTHO05D003147 3.1e-10 70.5 145 27.6
Zm00001eb332310 Zea mays HOM05D007295 ORTHO05D007705 3.1e-10 70.5 144 34.7
Zm00001eb167440 Zea mays HOM05D007295 ORTHO05D007705 4.1e-10 70.1 121 39.7
Zm00001eb312550 Zea mays HOM05D007295 ORTHO05D030361 5.3e-10 69.7 310 28.1
Nn5g30764 Nelumbo nucifera HOM05D000665 ORTHO05D003147 9.1e-10 68.9 337 23.7
MBI19_g03252_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 1.2e-09 68.6 134 25.4
Zm00001eb186670 Zea mays HOM05D007295 ORTHO05D007705 2.0e-09 67.8 147 36.7
Eucgr.F03745 Eucalyptus grandis HOM05D000665 ORTHO05D000285 5.9e-09 66.2 213 26.8
Zm00001eb167890 Zea mays HOM05D007295 ORTHO05D007705 1.3e-08 65.1 144 36.8
TAR383G0921 Trochodendron aralioides HOM05D000665 ORTHO05D000140 2.9e-08 63.9 154 27.3
Lsat_1_v5_gn_6_77601 Lactuca sativa HOM05D000665 ORTHO05D000140 3.8e-08 63.5 151 25.2
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 3.8e-08 63.5 132 26.5
Lj7C473G5 Lonicera japonica HOM05D000665 ORTHO05D000140 6.5e-08 62.8 138 27.5
Zm00001eb270200 Zea mays HOM05D007295 ORTHO05D007705 6.5e-08 62.8 151 35.8
Zm00001eb313380 Zea mays HOM05D007295 ORTHO05D007705 6.5e-08 62.8 147 34.7
ATR0776G057 Amborella trichopoda HOM05D000665 ORTHO05D000140 8.5e-08 62.4 197 23.9
Aqoxy1G03381 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 8.5e-08 62.4 203 25.1
Gohir.D08G228100 Gossypium hirsutum HOM05D000665 ORTHO05D000140 8.5e-08 62.4 146 26.0
Zm00001eb231440 Zea mays HOM05D007295 ORTHO05D007705 1.1e-07 62.0 99 42.4
PSO541G5512 Papaver somniferum HOM05D000665 ORTHO05D000140 1.4e-07 61.6 134 24.6
TAR381G0952 Trochodendron aralioides HOM05D000665 ORTHO05D003147 1.4e-07 61.6 330 21.2
TAR636G0533 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.4e-07 61.6 136 24.3
Gohir.D11G180700 Gossypium hirsutum HOM05D000665 ORTHO05D003147 1.9e-07 61.2 108 27.8
CiPaw.15G145500 Carya illinoinensis HOM05D000665 ORTHO05D000140 2.5e-07 60.8 161 24.2
Aa31sc83G50 Aethionema arabicum HOM05D000665 ORTHO05D000140 3.2e-07 60.5 151 23.8
PSO423G0050 Papaver somniferum HOM05D000665 ORTHO05D000140 3.2e-07 60.5 147 23.8
PSO543G0001 Papaver somniferum HOM05D000665 ORTHO05D000140 3.2e-07 60.5 161 21.7
PSO675G6027 Papaver somniferum HOM05D000665 ORTHO05D000140 3.2e-07 60.5 161 22.4
CSS0011103 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 4.2e-07 60.1 164 25.0
Gohir.A08G211300 Gossypium hirsutum HOM05D000665 ORTHO05D000140 4.2e-07 60.1 146 26.0
PSO063G3248 Papaver somniferum HOM05D000665 ORTHO05D000140 4.2e-07 60.1 135 24.4
Zm00001eb022610 Zea mays HOM05D007295 ORTHO05D007705 5.5e-07 59.7 147 35.4
Dinv33085 Davidia involucrata HOM05D000665 ORTHO05D000140 7.2e-07 59.3 193 22.8
PSO063G6652 Papaver somniferum HOM05D000665 ORTHO05D000140 7.2e-07 59.3 135 23.7
PSO675G3667 Papaver somniferum HOM05D000665 ORTHO05D000140 7.2e-07 59.3 135 23.7
Thecc.09G014200 Theobroma cacao HOM05D000665 ORTHO05D000140 7.2e-07 59.3 147 25.9
TAR633G2037 Trochodendron aralioides HOM05D000665 ORTHO05D003147 7.2e-07 59.3 152 25.0
Aqoxy1G03359 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 9.4e-07 58.9 213 24.4
BcaC02g08393 Brassica carinata HOM05D000665 ORTHO05D000140 9.4e-07 58.9 181 21.5
C04p54760 Brassica napus HOM05D000665 ORTHO05D000140 9.4e-07 58.9 181 21.5
Dinv04945 Davidia involucrata HOM05D000665 ORTHO05D000140 9.4e-07 58.9 134 23.1
PSO170G6729 Papaver somniferum HOM05D000665 ORTHO05D000140 9.4e-07 58.9 161 22.4
Zm00001eb094080 Zea mays HOM05D007295 ORTHO05D007705 9.4e-07 58.9 151 34.4
PSO675G9286 Papaver somniferum HOM05D000665 ORTHO05D000140 1.2e-06 58.5 164 24.4
Thecc.02G063400 Theobroma cacao HOM05D000665 ORTHO05D000140 1.2e-06 58.5 205 23.4
Duzib147G1337 Durio zibethinus HOM05D000665 ORTHO05D003147 1.6e-06 58.2 105 28.6
Glyma.03G217200 Glycine max HOM05D000665 ORTHO05D000140 1.6e-06 58.2 168 22.0
Gohir.A11G173600 Gossypium hirsutum HOM05D000665 ORTHO05D003147 1.6e-06 58.2 95 29.5
Zm00001eb077000 Zea mays HOM05D007295 ORTHO05D030361 1.6e-06 58.2 76 40.8
Atru.chr5.3284 Acer truncatum HOM05D000665 ORTHO05D000140 2.1e-06 57.8 213 21.1
Actinidia25828 Actinidia chinensis HOM05D000665 ORTHO05D000140 2.1e-06 57.8 171 24.0
ECA240G4363 Erigeron canadensis HOM05D000665 ORTHO05D000140 2.1e-06 57.8 155 24.5
HanXRQChr03g0084731 Helianthus annuus HOM05D000665 ORTHO05D000140 2.1e-06 57.8 155 25.8
Gohir.D01G157200 Gossypium hirsutum HOM05D000665 ORTHO05D000140 2.7e-06 57.4 135 23.0
MBI18_g11288_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 2.7e-06 57.4 159 25.2
PSO832G3578 Papaver somniferum HOM05D000665 ORTHO05D000140 2.7e-06 57.4 135 23.7
CANSAT25G2307 Cannabis sativa HOM05D000665 ORTHO05D000140 3.6e-06 57.0 129 22.5
Cpa.g.sc148.33 Carica papaya HOM05D000665 ORTHO05D000140 3.6e-06 57.0 148 24.3
CiPaw.05G079800 Carya illinoinensis HOM05D000665 ORTHO05D000140 3.6e-06 57.0 154 22.1
Ciclev10019662m.g Citrus clementina HOM05D000665 ORTHO05D000140 3.6e-06 57.0 138 23.9
COL.COLO4_18963 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.6e-06 57.0 138 25.4
Rhsim02G0216200 Rhododendron simsii HOM05D000665 ORTHO05D000140 3.6e-06 57.0 141 24.1
Sed0002116 Sechium edule HOM05D000665 ORTHO05D000140 3.6e-06 57.0 174 24.7
Haze_02167 Corylus avellana HOM05D000665 ORTHO05D000140 4.7e-06 56.6 205 21.5
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.7e-06 56.6 132 28.8
Gorai.004G242300 Gossypium raimondii HOM05D000665 ORTHO05D000140 4.7e-06 56.6 151 24.5
Rhsim01G0288300 Rhododendron simsii HOM05D000665 ORTHO05D000140 4.7e-06 56.6 150 23.3
BolC4t27021H Brassica oleracea HOM05D000665 ORTHO05D000140 6.1e-06 56.2 201 22.4
THA.LOC104825955 Tarenaya hassleriana HOM05D000665 ORTHO05D000140 6.1e-06 56.2 175 24.6
GSVIVG01024053001 Vitis vinifera HOM05D000665 ORTHO05D000140 6.1e-06 56.2 211 22.7
BraA04t17527Z Brassica rapa HOM05D000665 ORTHO05D000140 7.9e-06 55.8 201 21.9
CARHR116760 Cardamine hirsuta HOM05D000665 ORTHO05D000140 7.9e-06 55.8 198 25.8
COL.COLO4_13504 Corchorus olitorius HOM05D000665 ORTHO05D000140 7.9e-06 55.8 115 20.9
Duzib132G1144 Durio zibethinus HOM05D000665 ORTHO05D000140 7.9e-06 55.8 321 20.2
Gohir.D05G062750 Gossypium hirsutum HOM05D000653 ORTHO05D002177 7.9e-06 55.8 152 25.0
Gorai.009G063800 Gossypium raimondii HOM05D000653 ORTHO05D002177 7.9e-06 55.8 152 25.0
Lj3g0017321 Lotus japonicus HOM05D000665 ORTHO05D000140 7.9e-06 55.8 129 23.3
Rhsim02G0174000 Rhododendron simsii HOM05D021294 ORTHO05D000921 7.9e-06 55.8 138 24.6


User provided reference genes

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