Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 5.0e-145 517.7 249 100.0
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 1.2e-45 187.6 252 44.8
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 1.0e-25 121.3 232 37.1
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 3.3e-24 116.3 231 33.3
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 1.3e-23 114.4 244 34.0
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 2.2e-23 113.6 251 34.3
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 4.8e-23 112.5 242 34.7
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 6.3e-23 112.1 250 32.8
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 1.4e-22 110.9 243 31.7
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 3.1e-22 109.8 234 34.2
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 3.1e-22 109.8 239 33.5
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 4.1e-22 109.4 235 32.3
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 5.3e-22 109.0 236 34.3
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 5.3e-22 109.0 250 32.8
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 9.1e-22 108.2 239 34.3
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 9.1e-22 108.2 241 32.0
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 9.1e-22 108.2 221 35.7
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 1.2e-21 107.8 243 31.3
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 1.5e-21 107.5 235 34.9
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 1.5e-21 107.5 221 32.6
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 2.6e-21 106.7 247 32.0
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 4.5e-21 105.9 225 33.3
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 5.9e-21 105.5 254 30.3
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 7.7e-21 105.1 228 30.3
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 7.7e-21 105.1 227 33.9
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 7.7e-21 105.1 232 32.8
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 1.0e-20 104.8 232 34.9
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 1.7e-20 104.0 237 33.3
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 2.2e-20 103.6 238 30.7
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 2.9e-20 103.2 231 32.5
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 2.9e-20 103.2 233 33.9
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 2.9e-20 103.2 228 32.9
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 3.8e-20 102.8 226 35.0
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 5.0e-20 102.4 225 34.2
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 6.5e-20 102.1 230 33.5
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 6.5e-20 102.1 231 33.3
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 6.5e-20 102.1 256 30.1
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 8.5e-20 101.7 285 29.5
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 8.5e-20 101.7 243 32.5
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 1.1e-19 101.3 238 32.4
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 1.1e-19 101.3 243 31.7
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 1.4e-19 100.9 236 31.8
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 1.4e-19 100.9 223 32.3
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 1.9e-19 100.5 247 32.0
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 2.5e-19 100.1 238 32.4
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 2.5e-19 100.1 235 31.1
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 4.2e-19 99.4 225 31.6
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 4.2e-19 99.4 246 32.5
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 5.5e-19 99.0 234 30.8
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 5.5e-19 99.0 228 32.9
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 7.2e-19 98.6 218 31.2
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 9.4e-19 98.2 238 29.8
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 1.6e-18 97.4 218 32.1
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 2.1e-18 97.1 250 31.6
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 2.1e-18 97.1 244 30.3
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 2.7e-18 96.7 246 30.1
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 3.6e-18 96.3 245 30.2
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 4.7e-18 95.9 236 33.1
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 8.0e-18 95.1 226 31.9
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 8.0e-18 95.1 211 33.2
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 1.4e-17 94.4 257 28.8
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 1.4e-17 94.4 219 32.0
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 1.8e-17 94.0 233 32.2
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 1.8e-17 94.0 261 29.1
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 3.0e-17 93.2 220 31.8
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 3.9e-17 92.8 234 32.1
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 5.2e-17 92.4 232 30.6
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.6e-16 90.1 242 27.7
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 3.3e-16 89.7 234 31.6
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 3.3e-16 89.7 247 29.6
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 3.3e-16 89.7 250 33.2
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 4.4e-16 89.4 241 27.8
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 4.4e-16 89.4 240 30.8
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 5.7e-16 89.0 122 41.0
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 5.7e-16 89.0 235 29.8
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.7e-15 87.4 218 30.7
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 2.8e-15 86.7 241 27.4
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.8e-15 86.7 243 30.0
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 3.7e-15 86.3 239 27.2
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 1.1e-14 84.7 101 45.5
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 1.4e-14 84.3 276 28.6
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 9.1e-14 81.6 228 28.5
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 2.0e-13 80.5 248 29.0
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 2.0e-13 80.5 80 51.2
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 3.5e-13 79.7 118 41.5
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 4.5e-13 79.3 75 53.3
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 1.3e-12 77.8 90 45.6
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 1.3e-12 77.8 104 41.3
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 1.3e-12 77.8 104 41.3
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 1.3e-12 77.8 104 41.3
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 1.3e-12 77.8 104 41.3
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 1.3e-12 77.8 104 41.3
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 1.7e-12 77.4 76 53.9
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 1.7e-12 77.4 87 50.6
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 3.8e-12 76.3 90 44.4
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 5.0e-12 75.9 90 44.4
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 2.5e-11 73.6 90 43.3
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 4.2e-11 72.8 69 47.8
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 1.8e-09 67.4 234 28.2
Dinv09218 Davidia involucrata HOM05D002304 ORTHO05D002363 8.2e-07 58.5 57 47.4
Hma1.2p1_0459F.1_g157130 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 8.2e-07 58.5 57 49.1
vmacro16079 Vaccinium macrocarpon HOM05D002304 ORTHO05D002363 8.2e-07 58.5 57 49.1
Actinidia34006 Actinidia chinensis HOM05D002304 ORTHO05D002363 1.1e-06 58.2 57 49.1
Rhsim12G0098700 Rhododendron simsii HOM05D002304 ORTHO05D002363 1.4e-06 57.8 57 47.4
CSS0042081 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 1.8e-06 57.4 57 47.4
Hund25504 Selenicereus undatus HOM05D002304 ORTHO05D002363 2.4e-06 57.0 57 49.1
Cc04_g08240 Coffea canephora HOM05D002304 ORTHO05D002363 3.1e-06 56.6 59 47.5
Phvul.008G018600 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 3.1e-06 56.6 82 36.6
Aqoxy5G03200 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 4.1e-06 56.2 57 49.1
HPP92_011745 Vanilla planifolia HOM05D002304 ORTHO05D002363 4.1e-06 56.2 69 42.0
Aqoxy5G03199 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 5.3e-06 55.8 57 49.1
SalBow2G2147 Salvia bowleyana HOM05D002304 ORTHO05D002363 5.3e-06 55.8 208 25.5
Os03g0850300 Oryza sativa ssp. japonica HOM05D002304 ORTHO05D002363 7.0e-06 55.5 60 45.0
MSTRG.464 Avicennia marina HOM05D002304 ORTHO05D002363 9.1e-06 55.1 57 47.4
Glyma.04G199700 Glycine max HOM05D002304 ORTHO05D002363 9.1e-06 55.1 115 30.4
Oeu058898.1 Olea europaea HOM05D002304 ORTHO05D002363 9.1e-06 55.1 54 48.1
Phvul.008G018900 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 9.1e-06 55.1 57 45.6
HPP92_013601 Vanilla planifolia HOM05D002304 ORTHO05D002363 9.1e-06 55.1 58 46.6


User provided reference genes

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