Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.6e-218 760.8 413 100.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.7e-174 616.3 371 85.4
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 7.5e-122 441.4 380 64.7
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.9e-118 429.1 382 63.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.5e-117 424.5 381 61.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.6e-111 405.6 386 59.3
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.7e-110 403.7 385 57.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.6e-109 398.7 385 57.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.6e-109 398.7 378 59.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.1e-108 396.7 385 57.4
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.8e-108 396.4 382 58.4
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.1e-107 394.4 403 56.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.1e-107 394.4 386 58.8
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.4e-107 394.0 384 57.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.8e-107 393.7 389 56.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.3e-107 393.3 372 57.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.1e-107 392.9 382 58.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.1e-107 392.9 390 56.9
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.1e-107 392.9 385 57.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.1e-107 392.9 381 58.0
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.1e-107 392.9 387 58.1
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 4.0e-107 392.5 386 57.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 5.2e-107 392.1 380 57.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.8e-107 391.7 382 59.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 8.9e-107 391.3 386 56.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 8.9e-107 391.3 380 56.8
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-106 391.0 384 59.6
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.2e-106 391.0 383 57.4
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.5e-106 390.6 395 57.2
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.5e-106 390.6 386 57.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.0e-106 390.2 385 56.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.4e-106 389.4 385 55.8
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.4e-106 389.4 385 55.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.4e-106 389.4 383 57.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 5.8e-106 388.7 388 55.9
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.8e-106 388.7 376 56.1
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.8e-106 388.7 384 58.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 5.8e-106 388.7 374 55.3
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.5e-106 388.3 394 56.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 7.5e-106 388.3 382 57.3
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 9.8e-106 387.9 382 55.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.7e-105 387.1 384 57.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.7e-105 386.0 375 56.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 4.9e-105 385.6 387 57.1
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 4.9e-105 385.6 386 57.0
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.9e-105 385.6 382 57.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-104 384.4 386 57.5
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.1e-104 384.4 384 57.8
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.4e-104 384.0 371 54.4
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.4e-104 384.0 381 57.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.9e-104 383.6 407 54.5
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.9e-104 383.6 381 56.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.4e-104 382.1 384 55.5
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 9.2e-104 381.3 383 58.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.2e-104 381.3 383 58.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 9.2e-104 381.3 393 55.2
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.1e-103 380.2 384 57.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.7e-103 379.8 383 57.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.7e-103 379.8 385 55.3
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.7e-103 379.8 382 57.3
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.5e-103 379.4 381 57.2
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.6e-103 379.0 383 55.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 6.0e-103 378.6 393 53.9
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-102 377.5 380 57.6
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 5.1e-102 375.6 394 54.6
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 6.6e-102 375.2 391 55.2
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.9e-101 373.6 380 54.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.9e-101 373.6 402 53.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.9e-101 373.6 386 56.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.3e-101 372.9 384 54.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 9.5e-101 371.3 394 53.3
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.2e-100 370.9 376 56.1
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.6e-100 370.5 387 56.1
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.6e-100 370.5 383 54.8
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-100 369.8 365 56.2
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.8e-100 369.8 365 56.2
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.8e-100 369.8 392 55.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.8e-100 369.8 367 55.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.6e-100 369.4 397 53.7
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 8.1e-100 368.2 396 52.5
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.1e-100 368.2 367 54.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.3e-99 366.7 370 56.5
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 8.9e-99 364.8 378 55.0
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.5e-98 364.0 379 54.4
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.5e-98 364.0 385 54.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-98 363.6 363 56.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.0e-98 363.6 390 53.1
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.4e-98 362.8 412 51.5
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.3e-97 360.9 363 55.6
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.3e-97 360.9 363 55.6
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.2e-97 360.1 373 53.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.1e-96 357.8 363 55.1
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.4e-96 357.5 371 54.7
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.4e-96 356.7 368 53.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.2e-96 356.3 372 54.6
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 4.1e-96 355.9 373 53.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.1e-96 355.1 365 53.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.2e-96 354.8 366 54.4
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-95 354.4 371 52.6
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.8e-95 351.7 368 52.2
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.7e-94 350.5 366 54.1
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.1e-93 347.8 372 52.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.5e-93 347.4 366 52.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.9e-93 347.1 377 53.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.7e-92 342.4 372 53.5
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 6.2e-92 342.0 372 53.5
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.1e-92 341.7 369 52.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.4e-91 340.1 368 52.4
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 4.4e-90 335.9 359 55.2
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.9e-89 332.4 313 57.2
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.4e-88 330.1 376 51.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.2e-88 329.3 370 51.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.3e-88 328.2 356 55.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 9.3e-88 328.2 388 50.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.0e-87 325.5 300 60.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.3e-86 323.6 370 50.5
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.9e-86 322.8 394 48.5
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-85 320.5 384 49.7
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-84 317.8 384 49.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-84 317.0 384 49.7
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.9e-78 296.2 394 48.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.8e-75 287.3 227 65.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-72 277.7 297 53.5
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.0e-62 245.0 247 55.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.5e-58 229.6 432 38.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.4e-56 224.6 392 37.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.2e-56 223.0 304 43.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.8e-51 207.6 215 53.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 8.5e-49 198.7 231 49.4
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.1e-47 194.1 204 55.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.1e-43 180.3 371 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.0e-38 163.7 294 35.0
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.4e-35 154.1 152 57.9
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.7e-33 147.9 147 59.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 7.2e-32 142.5 146 57.5
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-29 134.4 144 58.3
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.8e-28 130.6 158 50.6
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 5.2e-14 83.2 107 50.5
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.6e-10 71.6 76 51.3
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.0e-09 66.6 161 34.8
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.6e-07 60.5 67 53.7


User provided reference genes

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