Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 7.4e-156 553.9 293 100.0
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 1.0e-64 251.1 271 50.2
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 3.0e-64 249.6 253 52.2
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 3.9e-64 249.2 279 50.2
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 4.3e-63 245.7 279 49.8
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 1.1e-61 241.1 270 49.3
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 5.2e-61 238.8 243 53.5
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 6.8e-61 238.4 267 50.9
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 8.9e-61 238.0 244 52.9
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 2.6e-60 236.5 242 52.1
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 4.4e-60 235.7 244 51.2
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 4.4e-60 235.7 257 51.0
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 5.8e-60 235.3 246 52.4
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 7.6e-60 235.0 244 53.7
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 7.6e-60 235.0 244 53.7
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 7.6e-60 235.0 286 44.8
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 9.9e-60 234.6 244 52.5
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 9.9e-60 234.6 243 52.7
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 1.3e-59 234.2 244 53.7
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 1.7e-59 233.8 244 52.9
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 1.7e-59 233.8 244 50.8
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 1.7e-59 233.8 243 50.2
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 1.7e-59 233.8 260 50.0
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 2.2e-59 233.4 244 52.5
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 2.9e-59 233.0 252 49.2
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 3.8e-59 232.6 261 47.5
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 3.2e-58 229.6 245 50.2
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 7.1e-58 228.4 247 51.8
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 1.2e-57 227.6 303 42.9
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 2.1e-57 226.9 248 51.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.7e-57 226.5 267 47.2
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 4.6e-57 225.7 243 51.9
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.6e-57 225.7 263 50.6
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 4.6e-57 225.7 288 45.8
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 3.0e-56 223.0 242 49.2
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 5.1e-56 222.2 263 46.4
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 8.7e-56 221.5 254 48.8
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 3.3e-55 219.5 245 49.8
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 3.3e-55 219.5 265 47.5
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 5.6e-55 218.8 240 49.6
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 9.6e-55 218.0 279 46.6
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 2.1e-54 216.9 230 51.3
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 2.8e-54 216.5 250 48.8
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 3.6e-54 216.1 302 42.4
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 1.8e-53 213.8 202 56.4
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 9.0e-53 211.5 287 44.9
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 1.2e-52 211.1 297 41.8
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 1.2e-52 211.1 243 46.9
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 2.6e-52 209.9 242 47.9
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 4.2e-50 202.6 248 44.8
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 9.3e-50 201.4 216 49.5
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 1.6e-49 200.7 227 52.0
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 1.7e-48 197.2 278 43.5
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 9.6e-47 191.4 241 43.6
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 3.4e-44 183.0 211 46.0
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 4.9e-43 179.1 206 48.1
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 4.9e-43 179.1 203 46.3
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 6.4e-43 178.7 202 45.5
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 8.4e-43 178.3 233 42.9
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 2.3e-40 170.2 203 44.8
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 4.3e-39 166.0 208 43.8
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 8.1e-38 161.8 288 34.4
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 1.3e-32 144.4 142 52.1
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 2.8e-30 136.7 127 63.8
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 8.2e-30 135.2 243 37.0
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 1.3e-24 117.9 103 56.3
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 2.3e-24 117.1 86 66.3
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 3.0e-24 116.7 98 66.3
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 4.8e-22 109.4 248 32.3
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 4.8e-22 109.4 96 59.4
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 2.4e-21 107.1 121 47.9
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 2.0e-20 104.0 76 67.1
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 1.3e-11 74.7 99 42.4
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 5.7e-07 59.3 211 24.6


User provided reference genes

Program Settings