Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.1e-75 284.6 143 100.0
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.6e-63 245.0 143 83.2
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.5e-61 239.6 143 80.4
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 6.3e-52 207.6 140 68.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.3e-49 199.9 140 67.1
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.3e-49 199.9 140 64.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.7e-49 199.5 140 65.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.2e-49 199.1 140 65.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.9e-49 198.7 141 63.1
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.0e-49 198.0 140 62.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 6.5e-49 197.6 140 66.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.5e-49 197.2 140 64.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.1e-48 196.8 141 65.2
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.1e-48 196.8 140 62.9
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-48 196.1 140 62.9
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.5e-48 195.7 140 62.1
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-48 195.7 139 64.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.5e-48 195.7 139 63.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 3.2e-48 195.3 140 64.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.2e-48 194.9 139 64.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 4.2e-48 194.9 140 64.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.2e-48 194.9 140 63.6
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.5e-48 194.5 139 63.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.5e-48 194.5 140 63.6
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.2e-48 194.1 140 62.9
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.4e-48 193.7 139 65.5
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-47 193.4 139 62.6
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-47 193.4 139 63.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.2e-47 193.4 140 62.1
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.2e-47 193.4 141 62.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.6e-47 193.0 139 62.6
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-47 193.0 139 62.6
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-47 193.0 139 62.6
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.1e-47 192.6 139 64.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.1e-47 192.6 140 62.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.7e-47 192.2 140 62.1
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.6e-47 191.8 141 64.5
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-47 191.8 139 61.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-47 191.8 139 62.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.7e-47 191.4 140 64.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.1e-47 191.0 139 64.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.1e-47 191.0 139 64.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 6.1e-47 191.0 139 64.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 6.1e-47 191.0 140 62.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.0e-46 190.3 139 63.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.0e-46 190.3 140 62.1
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.4e-46 189.9 140 60.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-46 189.9 139 61.9
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.8e-46 189.5 139 61.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.8e-46 189.5 140 62.1
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.3e-46 189.1 139 62.6
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.0e-46 188.7 140 62.1
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.0e-46 188.3 139 62.6
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 4.0e-46 188.3 139 62.6
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.2e-46 188.0 139 61.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.8e-46 187.2 142 59.2
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.8e-46 187.2 142 59.2
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 8.8e-46 187.2 141 62.4
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 8.8e-46 187.2 142 58.5
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.6e-45 185.7 142 58.5
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-45 185.7 142 58.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-45 185.7 142 58.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.6e-45 185.7 141 61.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.6e-45 185.7 139 61.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.4e-45 185.3 142 58.5
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 3.4e-45 185.3 139 61.2
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.4e-45 185.3 140 60.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.4e-45 184.9 139 61.2
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 5.7e-45 184.5 140 59.3
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.7e-45 184.5 140 57.9
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 7.5e-45 184.1 141 62.4
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-45 184.1 142 57.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 9.8e-45 183.7 142 62.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-44 183.0 151 57.0
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-44 183.0 146 58.9
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.7e-44 183.0 141 62.4
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.8e-44 181.4 141 61.0
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 8.3e-44 180.6 137 60.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.8e-43 179.5 139 59.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.1e-43 178.7 149 56.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.1e-43 178.3 139 59.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.1e-43 178.3 140 56.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 7.0e-43 177.6 139 59.7
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.1e-43 177.2 140 58.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 9.1e-43 177.2 139 58.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.2e-42 176.8 140 60.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.2e-42 176.8 142 57.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.2e-42 176.8 142 59.9
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-42 176.4 139 58.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-42 176.4 139 57.6
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.0e-42 176.0 140 56.4
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.7e-42 175.6 132 62.1
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 7.7e-42 174.1 150 56.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 7.7e-42 174.1 139 59.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.3e-41 173.3 139 56.8
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.3e-41 173.3 139 55.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.3e-41 172.6 140 55.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.9e-41 172.2 140 56.4
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.8e-41 171.8 139 58.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.0e-41 171.4 142 56.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.5e-41 171.0 140 55.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 6.5e-41 171.0 139 57.6
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.1e-40 170.2 141 58.9
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.3e-40 168.7 135 54.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.5e-40 167.9 139 56.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.2e-40 167.5 139 54.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 7.2e-40 167.5 140 55.0
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 9.5e-40 167.2 139 53.2
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.5e-40 167.2 139 55.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 9.5e-40 167.2 140 59.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 9.5e-40 167.2 139 55.4
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.1e-39 166.0 140 55.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.6e-39 165.2 139 53.2
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.6e-39 165.2 139 53.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.6e-39 165.2 151 50.3
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 4.7e-39 164.9 139 55.4
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.1e-39 164.5 139 51.8
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.0e-38 163.7 139 54.0
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.4e-38 163.3 138 55.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-38 162.9 139 54.7
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.0e-38 162.2 139 51.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 3.0e-38 162.2 173 48.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.0e-38 161.8 139 52.5
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.0e-38 161.8 160 50.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 6.8e-38 161.0 140 50.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 6.8e-38 161.0 140 50.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 8.9e-38 160.6 140 50.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 8.9e-38 160.6 140 50.7
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 8.9e-38 160.6 140 50.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-37 159.8 139 53.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-37 159.5 139 51.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.4e-37 158.7 211 40.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 4.4e-37 158.3 140 54.3
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.3e-36 156.8 183 44.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.2e-36 156.0 139 51.1
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.1e-35 152.1 136 50.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.9e-33 145.6 105 62.9
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.9e-33 145.6 105 62.9
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.8e-33 145.2 104 62.5
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-32 141.4 119 55.5
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.8e-30 136.3 105 56.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-30 134.4 140 50.7
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.9e-28 128.3 131 48.9
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 5.4e-27 124.8 140 45.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.2e-26 123.6 126 49.2
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.2e-26 123.6 126 49.2
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.0e-26 122.9 139 44.6
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-24 116.7 81 61.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.2e-23 113.6 91 54.9
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.7e-23 111.7 81 59.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 6.2e-23 111.3 85 54.1
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.0e-22 108.6 86 54.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 6.8e-22 107.8 142 38.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.2e-21 107.1 95 51.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.5e-21 106.7 81 56.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.2e-20 102.8 136 36.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 4.9e-20 101.7 138 33.3
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.1e-19 100.5 141 36.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 9.2e-19 97.4 79 51.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-17 93.2 95 46.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.3e-17 92.8 136 30.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 3.0e-17 92.4 102 44.1
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 5.0e-17 91.7 139 38.1
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.1e-15 86.3 72 56.9
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.2e-15 84.7 147 29.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.4e-13 79.0 106 32.1
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.1e-11 72.0 82 50.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 9.2e-11 70.9 141 30.5
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.1e-09 65.1 58 56.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 6.6e-09 64.7 123 24.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-08 63.9 65 44.6
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.3e-08 62.4 84 42.9
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-08 62.0 44 61.4


User provided reference genes

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