Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 9.1e-75 283.5 143 100.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.7e-63 244.6 143 83.2
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.3e-59 231.1 143 78.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 7.7e-50 200.7 140 65.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.6e-47 193.0 140 62.9
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.7e-47 191.4 140 62.9
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.0e-47 190.7 140 62.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 8.0e-47 190.7 140 62.9
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 8.0e-47 190.7 140 61.4
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.8e-46 189.5 140 62.9
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.8e-46 189.5 141 63.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 4.0e-46 188.3 141 63.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.0e-46 188.3 140 61.4
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.2e-46 188.0 140 60.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 5.2e-46 188.0 140 64.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.8e-46 187.6 140 61.4
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 6.8e-46 187.6 140 60.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.8e-46 187.6 139 64.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 6.8e-46 187.6 140 61.4
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 8.8e-46 187.2 140 64.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.5e-45 186.4 140 61.4
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.5e-45 186.4 140 62.9
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.0e-45 186.0 140 61.4
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-45 186.0 139 64.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.0e-45 186.0 139 63.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.0e-45 186.0 140 60.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.0e-45 186.0 141 62.4
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.4e-45 185.3 140 62.1
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.4e-45 185.3 139 62.6
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 4.4e-45 184.9 140 61.4
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.4e-45 184.9 139 62.6
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.4e-45 184.9 140 61.4
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 5.7e-45 184.5 139 62.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.7e-45 184.5 140 59.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 7.5e-45 184.1 141 64.5
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.8e-45 183.7 139 61.2
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 9.8e-45 183.7 140 61.4
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 9.8e-45 183.7 140 60.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.8e-45 183.7 139 63.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 9.8e-45 183.7 139 63.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 62.6
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 61.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 61.2
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 61.2
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-44 183.3 140 62.1
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.3e-44 183.3 140 60.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 64.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 64.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.3e-44 183.3 139 64.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-44 183.0 139 61.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.7e-44 183.0 141 64.5
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-44 182.2 139 60.4
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-44 182.2 139 61.2
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.7e-44 181.8 141 59.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 8.3e-44 180.6 139 62.6
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-43 180.3 139 59.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.1e-43 180.3 139 61.9
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.1e-43 180.3 139 59.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.1e-43 180.3 139 61.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.4e-43 179.9 140 59.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-43 179.5 139 61.9
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.4e-43 179.1 139 60.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 4.1e-43 178.3 142 62.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.1e-43 178.3 139 59.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.2e-42 176.8 140 59.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.0e-42 176.0 141 61.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.7e-42 175.6 142 60.6
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.7e-42 175.6 142 56.3
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.7e-42 175.6 142 56.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.7e-42 175.6 140 58.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.5e-42 175.3 139 59.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.5e-42 175.3 139 59.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.5e-42 174.9 137 59.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 4.5e-42 174.9 142 55.6
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 5.9e-42 174.5 141 60.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 7.7e-42 174.1 142 55.6
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.7e-42 174.1 142 55.6
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.7e-42 174.1 142 55.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.0e-41 173.7 139 60.4
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.0e-41 173.7 142 55.6
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.0e-41 173.7 141 58.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-41 173.3 151 55.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-41 173.3 146 56.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.3e-41 173.3 135 57.8
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-41 172.6 142 54.9
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.3e-41 172.6 139 59.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.5e-41 171.0 140 57.1
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 6.5e-41 171.0 132 64.4
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-40 170.2 140 55.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-40 170.2 139 60.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-40 169.9 139 56.1
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-40 169.5 140 57.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.5e-40 169.1 149 54.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.2e-40 168.3 139 57.6
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.2e-40 167.5 139 56.8
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.2e-40 167.5 141 56.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 9.5e-40 167.2 142 54.9
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 3.6e-39 165.2 150 54.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 6.1e-39 164.5 139 57.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.1e-39 164.5 140 52.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 6.1e-39 164.5 140 53.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 8.0e-39 164.1 151 52.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.4e-38 163.3 142 54.9
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.8e-38 162.9 137 56.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.9e-38 160.6 139 54.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-37 159.8 140 53.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.5e-37 159.8 139 54.0
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.6e-37 159.1 160 49.4
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.4e-37 158.7 139 54.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 4.4e-37 158.3 140 53.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 4.4e-37 158.3 140 57.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.7e-37 157.9 139 53.2
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.7e-37 157.9 139 54.0
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 9.8e-37 157.1 139 53.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.3e-36 156.8 140 52.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.3e-36 156.8 139 51.8
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.2e-36 156.0 139 52.5
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.3e-36 154.5 139 52.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 6.3e-36 154.5 139 51.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-35 153.7 139 50.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-35 152.9 139 52.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.8e-35 152.9 140 51.4
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.8e-35 152.9 140 51.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.8e-35 152.9 173 48.0
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.8e-35 152.9 211 39.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.4e-35 152.5 140 52.9
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-35 151.8 140 50.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-35 151.8 140 50.7
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 4.1e-35 151.8 140 50.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 4.1e-35 151.8 139 51.8
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-35 151.8 183 43.2
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.1e-35 151.8 138 52.2
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 9.2e-35 150.6 139 49.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.2e-35 150.6 136 52.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 9.2e-35 150.6 139 51.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.5e-34 148.7 139 51.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 8.0e-31 137.5 105 60.0
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 8.0e-31 137.5 105 60.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-30 136.7 104 60.6
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 8.9e-30 134.0 119 53.8
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.3e-28 130.2 105 56.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 9.2e-27 124.0 140 48.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-26 123.2 131 48.9
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 3.5e-26 122.1 126 51.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 3.5e-26 122.1 126 51.6
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-25 119.0 140 42.1
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-24 116.7 139 41.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.5e-24 115.9 81 60.5
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.5e-24 115.9 82 59.8
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.8e-23 112.5 85 58.8
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.3e-22 109.4 85 56.5
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 4.0e-22 108.6 81 58.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.0e-21 106.3 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 5.8e-21 104.8 138 36.2
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.9e-20 101.7 136 38.2
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-19 100.1 86 51.2
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.4e-19 100.1 142 37.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 7.8e-18 94.4 79 51.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.6e-16 88.2 92 46.7
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.6e-15 86.7 136 30.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.0e-14 82.0 139 33.8
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 6.8e-14 81.3 102 39.2
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-13 80.5 147 30.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 9.9e-13 77.4 72 52.8
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-11 72.4 106 30.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.1e-10 69.7 82 48.8
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.1e-08 63.9 127 25.2
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.1e-08 63.9 141 25.5
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-08 62.0 44 61.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 7.3e-08 61.2 65 43.1
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.5e-08 60.8 79 44.3


User provided reference genes

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