Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 5.1e-100 367.9 199 100.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.8e-76 289.7 227 74.0
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 5.5e-70 268.1 228 69.3
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.3e-68 262.7 228 69.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.2e-50 203.0 175 69.7
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.0e-44 184.1 196 60.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.6e-40 170.2 201 55.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 6.5e-39 164.9 109 83.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 5.2e-36 155.2 211 46.9
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.7e-31 140.2 162 59.3
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 6.1e-29 131.7 220 38.6
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 9.8e-27 124.4 220 37.3
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.3e-26 124.0 221 36.2
Zm00001eb332080 Zea mays HOM05D004657 ORTHO05D005562 1.7e-26 123.6 91 80.2
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.3e-26 121.7 220 38.2
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 8.3e-26 121.3 220 37.3
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.4e-25 120.6 218 37.6
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.4e-25 119.8 220 37.7
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.4e-25 119.8 219 38.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 4.1e-25 119.0 220 36.8
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 4.1e-25 119.0 220 36.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.1e-25 119.0 220 36.4
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 7.0e-25 118.2 220 37.7
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 7.0e-25 118.2 206 36.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 9.2e-25 117.9 220 36.8
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.2e-24 117.5 220 35.9
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.6e-24 117.1 220 37.7
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.6e-24 117.1 220 36.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.0e-24 116.7 208 36.5
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.7e-24 116.3 220 36.4
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.7e-24 116.3 220 36.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.5e-24 115.9 220 37.3
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.5e-24 115.9 220 35.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 4.5e-24 115.5 220 35.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 7.8e-24 114.8 220 35.9
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 7.8e-24 114.8 220 34.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.0e-23 114.4 220 35.5
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-23 114.0 206 35.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-23 114.0 206 35.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.7e-23 113.6 220 34.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.7e-23 113.6 220 35.9
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.7e-23 113.6 206 35.0
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 2.3e-23 113.2 220 35.5
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.9e-23 112.8 220 34.5
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.8e-23 112.5 220 35.5
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.0e-23 112.1 220 34.5
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 5.0e-23 112.1 220 35.0
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 5.0e-23 112.1 220 34.5
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.6e-23 111.7 220 34.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 6.6e-23 111.7 220 35.9
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 6.6e-23 111.7 220 34.1
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.6e-23 111.3 220 34.5
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 8.6e-23 111.3 219 36.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 8.6e-23 111.3 220 35.9
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.1e-22 110.9 220 35.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.1e-22 110.9 220 35.0
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.1e-22 110.9 220 34.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.1e-22 110.9 206 35.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.5e-22 110.5 220 35.9
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.5e-22 110.5 220 34.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.9e-22 110.2 215 33.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.9e-22 110.2 220 34.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.9e-22 110.2 206 34.0
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.9e-22 110.2 219 34.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.5e-22 109.8 220 35.9
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 3.3e-22 109.4 220 35.5
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 4.3e-22 109.0 220 34.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 4.3e-22 109.0 220 34.5
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 4.3e-22 109.0 220 34.5
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.3e-22 109.0 220 33.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 4.3e-22 109.0 225 35.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.3e-22 109.0 220 34.5
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 4.3e-22 109.0 110 60.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 35.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 35.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 35.0
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 34.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 34.5
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 5.6e-22 108.6 220 35.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 7.3e-22 108.2 208 37.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 7.3e-22 108.2 220 34.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.3e-22 108.2 220 33.6
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 7.3e-22 108.2 225 35.1
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 9.5e-22 107.8 220 35.0
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 9.5e-22 107.8 220 35.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-21 107.5 220 33.6
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.2e-21 107.5 220 33.6
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.6e-21 107.1 220 35.9
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.1e-21 106.7 220 34.1
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.1e-21 106.7 221 33.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.8e-21 106.3 220 34.5
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.6e-21 105.9 220 33.6
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.6e-21 105.9 220 33.6
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 3.6e-21 105.9 221 34.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.6e-21 105.9 217 35.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.7e-21 105.5 206 34.5
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.7e-21 105.5 206 34.5
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 6.1e-21 105.1 220 35.0
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 8.0e-21 104.8 220 33.6
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.0e-20 104.4 220 34.1
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.0e-20 104.4 220 31.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.0e-20 104.4 220 33.2
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.0e-20 104.4 206 34.5
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 2.3e-20 103.2 221 34.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 3.0e-20 102.8 206 33.5
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.0e-20 102.8 193 35.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.0e-20 102.8 208 34.6
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.0e-20 102.8 220 33.2
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 3.0e-20 102.8 107 58.9
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.2e-20 102.1 220 34.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 8.9e-20 101.3 221 33.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 8.9e-20 101.3 206 32.5
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.2e-19 100.9 221 33.0
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.2e-19 100.9 220 33.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.2e-19 100.9 205 34.6
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.2e-19 100.9 200 33.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-19 100.5 221 33.0
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.5e-19 100.5 65 80.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.0e-19 100.1 220 34.5
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.0e-19 100.1 220 33.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.4e-19 99.4 220 34.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.4e-19 99.0 203 31.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 4.4e-19 99.0 107 57.9
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.7e-19 98.6 221 32.6
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.7e-19 98.6 221 32.6
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 7.5e-19 98.2 206 30.6
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 9.8e-19 97.8 220 32.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.3e-18 97.4 206 32.0
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.3e-18 97.4 220 32.7
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.3e-18 97.4 109 60.6
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.7e-18 97.1 220 33.2
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.9e-18 96.3 220 32.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 3.7e-18 95.9 214 30.8
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 8.3e-18 94.7 206 30.6
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.4e-17 93.2 220 31.8
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.7e-15 87.0 204 33.3
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 1.5e-14 84.0 201 30.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.0e-11 73.6 205 33.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.6e-11 73.2 197 30.5
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.2e-10 70.1 196 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 3.7e-10 69.3 186 30.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.3e-07 60.8 114 34.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-06 57.8 100 38.0
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.9e-06 57.0 198 26.8
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.9e-06 57.0 79 40.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 2.5e-06 56.6 209 23.9
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.5e-06 56.6 77 40.3


User provided reference genes

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