Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 4.4e-42 174.9 139 100.0
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 9.5e-29 130.6 138 84.1
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 6.8e-19 97.8 133 72.2
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 2.9e-17 92.4 128 65.6
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 3.8e-17 92.0 131 56.5
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 4.9e-17 91.7 132 69.7
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 4.9e-17 91.7 131 54.2
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 8.4e-17 90.9 131 55.7
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 8.4e-17 90.9 128 62.5
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 1.1e-16 90.5 136 52.9
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 1.1e-16 90.5 130 67.7
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 1.1e-16 90.5 130 67.7
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 3.2e-16 89.0 132 63.6
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 5.4e-16 88.2 130 53.8
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 7.1e-16 87.8 128 62.5
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 7.1e-16 87.8 131 62.6
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 7.1e-16 87.8 130 58.5
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 1.2e-15 87.0 127 63.0
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 4.6e-15 85.1 130 61.5
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 1.0e-14 84.0 133 63.9
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 1.7e-14 83.2 137 51.8
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 2.3e-14 82.8 130 66.2
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 2.3e-14 82.8 126 67.5
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 2.3e-14 82.8 130 68.5
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 3.0e-14 82.4 128 64.1
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 3.9e-14 82.0 128 59.4
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 3.9e-14 82.0 131 56.5
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 5.1e-14 81.6 132 49.2
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 6.6e-14 81.3 131 58.0
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 8.7e-14 80.9 134 67.9
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 8.7e-14 80.9 138 57.2
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 8.7e-14 80.9 130 57.7
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 8.7e-14 80.9 129 66.7
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 1.1e-13 80.5 130 65.4
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 1.1e-13 80.5 128 63.3
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 1.5e-13 80.1 129 58.1
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 3.3e-13 79.0 136 61.8
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 3.3e-13 79.0 130 57.7
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 5.6e-13 78.2 131 65.6
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 7.3e-13 77.8 129 57.4
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 7.3e-13 77.8 126 53.2
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 7.3e-13 77.8 126 61.1
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 7.3e-13 77.8 129 58.9
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 9.6e-13 77.4 129 58.9
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 1.3e-12 77.0 125 60.8
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 1.6e-12 76.6 130 53.1
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 1.6e-12 76.6 131 54.2
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 2.1e-12 76.3 129 64.3
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 2.1e-12 76.3 129 64.3
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 2.1e-12 76.3 126 62.7
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 2.1e-12 76.3 126 62.7
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 2.8e-12 75.9 129 64.3
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 2.8e-12 75.9 129 64.3
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 3.6e-12 75.5 129 58.9
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.6e-12 75.5 126 60.3
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 3.6e-12 75.5 149 53.0
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 3.6e-12 75.5 135 51.9
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 4.8e-12 75.1 131 51.9
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 4.8e-12 75.1 127 65.4
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 6.2e-12 74.7 139 56.1
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 8.1e-12 74.3 131 57.3
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 1.1e-11 73.9 128 67.2
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 1.1e-11 73.9 138 51.4
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 1.1e-11 73.9 132 64.4
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 1.4e-11 73.6 134 53.7
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 1.4e-11 73.6 134 53.7
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 1.8e-11 73.2 131 56.5
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 5.3e-11 71.6 139 53.2
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 5.3e-11 71.6 130 53.8
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 6.9e-11 71.2 130 48.5
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 6.9e-11 71.2 133 62.4
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 6.9e-11 71.2 130 63.1
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 9.0e-11 70.9 128 57.0
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 3.4e-10 68.9 135 49.6
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 3.4e-10 68.9 127 66.1
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 4.4e-10 68.6 128 60.9
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 4.4e-10 68.6 128 49.2
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 7.6e-10 67.8 154 41.6
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 9.9e-10 67.4 160 38.8
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 1.3e-09 67.0 157 56.7
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 3.8e-09 65.5 129 48.1
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 3.8e-09 65.5 127 55.9
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 9.3e-08 60.8 56 51.8
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 1.3e-06 57.0 63 44.4
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 5.1e-06 55.1 97 63.9


User provided reference genes

Program Settings