Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.9e-37 158.7 81 100.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.3e-25 119.4 76 72.4
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.9e-25 118.2 76 72.4
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 9.5e-21 103.2 74 63.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.2e-20 102.8 78 59.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.8e-20 101.7 74 62.2
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.8e-20 101.7 74 60.8
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.7e-20 100.9 74 60.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.3e-19 98.6 74 59.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 8.9e-19 96.7 73 60.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.9e-19 96.7 74 56.8
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.2e-18 96.3 74 58.1
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.5e-18 95.9 74 58.1
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.0e-18 95.5 74 58.1
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.0e-18 95.5 74 58.1
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.0e-18 95.5 74 55.4
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.0e-18 95.5 74 55.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 3.4e-18 94.7 74 54.1
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 4.4e-18 94.4 74 55.4
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.8e-18 94.0 74 56.8
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 5.8e-18 94.0 74 56.8
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 7.5e-18 93.6 74 55.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 9.8e-18 93.2 74 54.1
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.8e-18 93.2 66 62.1
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.3e-17 92.8 74 56.8
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.3e-17 92.8 74 55.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-17 92.4 74 52.7
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-17 92.4 74 52.7
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.7e-17 92.4 74 55.4
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.2e-17 92.0 74 55.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.2e-17 92.0 74 55.4
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.2e-17 92.0 74 52.7
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 3.7e-17 91.3 74 52.7
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.7e-17 91.3 74 54.1
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.7e-17 91.3 74 56.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.9e-17 90.9 74 52.7
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 6.4e-17 90.5 74 52.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 6.4e-17 90.5 74 56.8
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 6.4e-17 90.5 74 52.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 8.3e-17 90.1 74 56.8
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.1e-16 89.7 74 54.1
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.1e-16 89.7 74 54.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-16 89.4 74 50.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.4e-16 89.4 75 56.0
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.4e-16 89.4 74 52.7
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.9e-16 89.0 76 48.7
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.9e-16 89.0 74 51.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.9e-16 89.0 74 56.8
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.9e-16 89.0 74 52.7
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.9e-16 89.0 74 55.4
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.4e-16 88.6 73 52.1
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.2e-16 88.2 73 49.3
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.2e-16 88.2 74 51.4
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.2e-16 88.2 74 54.1
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.2e-16 88.2 74 51.4
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.2e-16 88.2 74 51.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.1e-16 87.8 74 52.7
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 4.1e-16 87.8 74 50.0
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 4.1e-16 87.8 74 51.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 4.1e-16 87.8 78 50.0
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.1e-16 87.8 74 50.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.1e-16 87.8 73 49.3
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 5.4e-16 87.4 72 55.6
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 5.4e-16 87.4 72 55.6
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 5.4e-16 87.4 72 55.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.4e-16 87.4 73 50.7
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 7.0e-16 87.0 74 51.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 7.0e-16 87.0 72 55.6
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 7.0e-16 87.0 74 51.4
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 7.0e-16 87.0 74 51.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.0e-16 87.0 74 50.0
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 9.2e-16 86.7 74 50.0
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 52.7
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 51.4
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 48.6
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 52.7
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 51.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 48.6
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-15 86.3 69 53.6
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-15 86.3 69 53.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-15 86.3 73 54.8
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 56.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 56.8
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-15 86.3 74 56.8
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.6e-15 85.9 72 54.2
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.6e-15 85.9 74 52.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-15 85.9 74 50.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.6e-15 85.9 74 51.4
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.0e-15 85.5 70 50.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.0e-15 85.5 70 50.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.0e-15 85.5 73 47.9
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.7e-15 85.1 74 51.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.5e-15 84.7 74 51.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.5e-15 84.7 74 52.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 4.6e-15 84.3 74 54.1
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 4.6e-15 84.3 74 54.1
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 4.6e-15 84.3 74 54.1
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 4.6e-15 84.3 74 54.1
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 6.0e-15 84.0 72 52.8
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-15 84.0 81 46.9
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 6.0e-15 84.0 74 48.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.7e-14 82.4 74 48.6
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.7e-14 82.4 74 50.0
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.7e-14 82.4 60 58.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.7e-14 82.4 64 53.1
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.3e-14 82.0 73 52.1
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.3e-14 82.0 74 50.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.3e-14 82.0 71 53.5
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 2.3e-14 82.0 74 47.3
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.3e-14 82.0 70 52.9
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 3.9e-14 81.3 79 48.1
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 6.6e-14 80.5 74 51.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 6.6e-14 80.5 74 48.6
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.9e-13 79.0 74 47.3
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.9e-13 79.0 59 54.2
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.5e-13 78.6 60 55.0
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 3.3e-13 78.2 59 54.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 3.3e-13 78.2 69 44.9
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.3e-13 77.8 60 53.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 4.3e-13 77.8 57 57.9
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.3e-13 77.0 58 53.4
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 7.3e-13 77.0 59 52.5
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 9.5e-13 76.6 59 57.6
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-12 76.3 58 60.3
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.6e-12 75.9 77 45.5
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.6e-12 75.9 73 43.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.6e-12 75.9 73 43.8
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.6e-12 75.9 64 48.4
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.1e-12 75.5 58 51.7
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-12 75.5 68 45.6
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 4.7e-12 74.3 74 44.6
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 6.2e-12 73.9 57 54.4
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.1e-11 73.2 58 56.9
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 5.2e-11 70.9 74 44.6
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 6.8e-11 70.5 52 55.8
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.2e-10 69.7 52 53.8
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-10 68.6 78 41.0
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 3.4e-10 68.2 68 48.5
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 5.8e-10 67.4 52 53.8
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 7.5e-10 67.0 50 54.0
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.6e-07 59.3 64 42.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-07 57.4 67 40.3
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.0e-06 56.6 68 32.4


User provided reference genes

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