Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 0.0e+00 1373.2 704 100.0
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.7e-87 327.4 324 59.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 7.6e-58 229.6 330 42.4
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 7.1e-56 223.0 325 42.5
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 3.5e-55 220.7 324 42.0
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 7.9e-55 219.5 537 35.0
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.3e-54 218.8 379 39.3
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.8e-54 218.4 323 44.0
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.3e-54 218.0 439 36.2
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 3.0e-54 217.6 322 41.3
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.0e-54 217.6 322 41.0
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 6.7e-54 216.5 333 39.9
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 6.7e-54 216.5 311 42.1
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 8.7e-54 216.1 389 38.3
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.9e-53 214.9 348 39.4
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.9e-53 214.9 323 41.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.9e-53 214.9 323 41.2
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.9e-53 214.9 322 41.6
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 3.3e-53 214.2 288 45.1
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 5.7e-53 213.4 410 36.6
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 5.7e-53 213.4 323 42.4
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.3e-52 212.2 341 39.9
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.6e-52 211.8 675 29.8
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.6e-52 211.8 323 41.5
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.7e-52 210.7 323 42.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 4.8e-52 210.3 312 41.7
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.8e-51 208.4 324 39.8
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 3.1e-51 207.6 321 41.4
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 3.1e-51 207.6 318 38.7
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 3.1e-51 207.6 336 42.6
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 4.1e-51 207.2 328 41.2
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 4.1e-51 207.2 375 36.5
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 5.3e-51 206.8 367 37.3
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.2e-50 205.7 303 41.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 3.4e-50 204.1 379 35.1
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 4.5e-50 203.8 297 43.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.9e-50 203.4 297 43.1
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 7.7e-50 203.0 330 40.6
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.0e-49 202.6 297 43.4
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.0e-49 202.6 323 40.6
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.3e-49 202.2 286 43.4
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.3e-49 202.2 322 39.8
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.7e-49 201.8 310 41.6
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.9e-49 201.1 323 41.2
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 3.8e-49 200.7 305 41.0
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.0e-49 200.3 297 42.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.0e-49 200.3 323 40.2
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 6.5e-49 199.9 414 36.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.4e-48 198.7 324 39.5
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 4.2e-48 197.2 325 42.2
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 4.2e-48 197.2 395 36.2
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 7.2e-48 196.4 434 36.2
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 7.2e-48 196.4 425 32.9
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 7.2e-48 196.4 301 42.2
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 7.2e-48 196.4 301 42.2
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 9.4e-48 196.1 481 31.8
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 9.4e-48 196.1 334 40.4
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.2e-47 195.7 355 38.3
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.2e-47 195.7 326 39.0
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.1e-47 194.9 296 39.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.1e-47 194.9 291 43.3
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-47 194.9 354 38.1
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.7e-47 194.5 303 39.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 2.7e-47 194.5 384 36.7
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 3.6e-47 194.1 322 40.1
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 4.6e-47 193.7 323 40.2
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 6.1e-47 193.4 323 40.2
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 7.9e-47 193.0 419 33.7
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.0e-46 192.6 323 38.7
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.0e-46 192.6 289 41.2
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.4e-46 192.2 301 41.9
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.8e-46 191.8 305 39.3
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.3e-46 191.4 487 31.2
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.9e-46 190.7 323 40.6
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 3.9e-46 190.7 392 34.4
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 8.8e-46 189.5 329 38.0
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 8.8e-46 189.5 329 38.0
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.1e-45 189.1 327 38.2
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.5e-45 188.7 397 35.3
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.0e-45 188.3 326 38.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.0e-45 188.3 271 42.4
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 2.5e-45 188.0 380 36.1
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 2.5e-45 188.0 348 37.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 3.3e-45 187.6 323 38.4
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 7.4e-45 186.4 327 37.9
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.3e-44 185.7 323 37.5
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.2e-44 184.9 323 37.5
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 2.8e-44 184.5 323 37.5
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.7e-44 184.1 353 37.4
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 3.7e-44 184.1 353 37.4
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 8.2e-44 183.0 291 40.9
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 8.2e-44 183.0 336 38.1
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.4e-43 182.2 332 38.3
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 3.1e-43 181.0 330 38.2
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 6.9e-43 179.9 325 37.2
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-42 179.1 332 38.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 1.2e-42 179.1 477 29.6
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 2.0e-42 178.3 508 30.9
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 2.6e-42 177.9 414 33.6
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 2.6e-42 177.9 274 39.4
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 7.7e-42 176.4 337 36.8
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 1.0e-41 176.0 323 36.8
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 6.5e-41 173.3 325 37.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 6.5e-41 173.3 565 29.0
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-39 169.1 687 27.4
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.1e-37 162.5 387 33.6
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 7.4e-37 159.8 285 38.6
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.7e-36 158.7 386 31.9
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.5e-34 152.1 386 32.4
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 7.2e-32 143.3 252 36.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 9.4e-32 142.9 299 35.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.6e-31 142.1 215 42.3
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 3.3e-29 134.4 213 40.4
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.8e-27 128.6 184 46.7
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.2e-26 125.9 317 32.2
Os11g0101200 Oryza sativa ssp. japonica HOM05D000932 ORTHO05D000729 2.9e-25 121.3 369 32.5
Os12g0101000 Oryza sativa ssp. japonica HOM05D000932 ORTHO05D000729 2.9e-25 121.3 369 32.5
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 2.0e-21 108.6 136 44.9
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.7e-18 98.2 118 46.6
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.0e-14 86.3 134 35.8
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.8e-14 83.6 147 36.1
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 6.3e-12 77.0 110 40.0
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 4.1e-11 74.3 114 36.8
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 5.4e-11 73.9 160 35.6
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.1e-08 66.2 120 33.3
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 6.1e-07 60.5 91 40.7
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 6.1e-07 60.5 91 40.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 3.0e-06 58.2 86 39.5
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 4.0e-06 57.8 69 43.5


User provided reference genes

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