Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 2.4e-85 318.9 180 100.0
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 7.9e-84 313.9 180 99.4
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 5.1e-83 311.2 180 98.3
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 1.1e-82 310.1 180 98.3
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 4.3e-82 308.1 170 98.2
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 5.6e-82 307.8 169 98.2
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 1.6e-81 306.2 180 97.2
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 1.6e-81 306.2 180 97.2
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 2.1e-81 305.8 180 97.8
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 7.1e-77 290.8 170 91.2
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 1.3e-70 270.0 180 83.9
Zm00001eb367390 Zea mays HOM05D003450 ORTHO05D004150 1.4e-56 223.4 124 98.4
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 3.8e-54 215.3 169 67.5
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 8.5e-54 214.2 169 65.1
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 1.0e-51 207.2 169 62.7
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 3.9e-51 205.3 171 64.9
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 5.2e-51 204.9 172 64.5
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 8.8e-51 204.1 172 64.5
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 1.1e-50 203.8 169 61.5
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.6e-50 202.6 169 61.5
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 3.3e-50 202.2 169 62.7
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 5.7e-50 201.4 169 60.9
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 7.4e-50 201.1 169 62.7
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 7.4e-50 201.1 170 61.8
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 1.7e-49 199.9 170 61.2
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 1.7e-49 199.9 169 60.9
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 2.8e-49 199.1 170 60.0
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 2.8e-49 199.1 169 61.5
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 3.7e-49 198.7 170 60.6
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 4.8e-49 198.4 169 63.3
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 4.8e-49 198.4 169 58.6
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 4.8e-49 198.4 169 60.9
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 6.3e-49 198.0 169 59.8
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 1.4e-48 196.8 169 62.7
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 9.1e-48 194.1 169 60.9
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.2e-47 193.7 170 60.6
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 1.2e-47 193.7 170 58.8
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 4.5e-47 191.8 169 60.4
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 1.0e-46 190.7 170 61.8
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.7e-46 189.9 169 59.2
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 1.1e-45 187.2 174 58.0
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.1e-45 187.2 169 60.9
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 1.5e-45 186.8 169 60.4
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 1.5e-45 186.8 169 59.8
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 1.9e-45 186.4 169 60.4
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 3.2e-45 185.7 170 56.5
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 3.2e-45 185.7 169 59.8
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 4.2e-45 185.3 170 58.2
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 9.4e-45 184.1 182 55.5
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 2.7e-44 182.6 171 59.6
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 2.7e-44 182.6 169 56.2
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 3.6e-44 182.2 169 56.8
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.6e-44 182.2 169 59.2
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.6e-44 182.2 169 58.6
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 4.7e-44 181.8 169 58.0
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.7e-44 181.8 169 58.0
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 6.1e-44 181.4 179 57.0
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.0e-43 180.6 170 58.2
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 1.4e-43 180.3 170 55.9
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 1.4e-43 180.3 169 57.4
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 1.4e-43 180.3 169 58.0
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.8e-43 179.9 166 57.2
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 1.8e-43 179.9 169 58.6
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 2.3e-43 179.5 169 58.0
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 2.3e-43 179.5 169 58.0
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 2.3e-43 179.5 168 58.9
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 2.3e-43 179.5 179 57.0
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 2.3e-43 179.5 169 58.0
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 3.0e-43 179.1 164 57.9
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 3.0e-43 179.1 170 56.5
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 3.0e-43 179.1 169 56.8
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.0e-43 178.7 169 57.4
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 6.7e-43 177.9 169 58.0
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 8.8e-43 177.6 170 57.1
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 1.2e-42 177.2 169 56.2
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 1.2e-42 177.2 169 55.6
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 2.0e-42 176.4 169 55.6
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 2.0e-42 176.4 169 56.2
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.0e-42 176.4 170 57.6
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 2.6e-42 176.0 168 57.1
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 4.4e-42 175.3 168 56.5
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 4.4e-42 175.3 163 57.1
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 5.7e-42 174.9 176 56.2
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 5.7e-42 174.9 170 55.9
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 7.5e-42 174.5 169 56.2
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 7.5e-42 174.5 169 56.2
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 9.7e-42 174.1 169 53.3
FAN18G3542 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.7e-41 173.3 148 61.5
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 2.8e-41 172.6 162 58.0
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 2.8e-41 172.6 163 58.9
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.7e-41 172.2 169 55.0
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.7e-41 172.2 169 55.0
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 6.3e-41 171.4 171 56.1
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 8.2e-41 171.0 166 55.4
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.4e-40 170.2 169 57.4
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 7.0e-40 167.9 170 53.5
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.0e-39 166.4 169 55.6
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 3.5e-39 165.6 170 55.3
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 7.7e-39 164.5 170 51.8
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.2e-38 162.9 169 55.0
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 8.5e-38 161.0 122 63.9
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 1.1e-37 160.6 169 56.8
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 2.5e-37 159.5 159 56.0
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.2e-37 159.1 127 63.8
CSS0010567 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.2e-37 159.1 124 66.9
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 4.2e-37 158.7 171 54.4
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.2e-36 157.1 163 57.1
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 2.1e-36 156.4 122 65.6
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.7e-36 156.0 180 53.9
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 1.0e-35 154.1 170 49.4
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 4.0e-35 152.1 168 52.4
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 5.2e-35 151.8 134 57.5
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 1.5e-34 150.2 168 52.4
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 1.5e-34 150.2 168 52.4
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 4.4e-34 148.7 167 50.3
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.3e-33 147.1 167 49.7
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 1.3e-33 147.1 167 49.7
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.7e-33 146.7 170 44.7
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 3.7e-33 145.6 166 48.2
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 3.7e-33 145.6 166 47.6
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 4.8e-33 145.2 140 56.4
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 6.3e-33 144.8 167 49.1
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 8.3e-33 144.4 167 49.1
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 8.3e-33 144.4 167 49.1
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 1.4e-32 143.7 169 50.3
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.8e-32 143.3 166 47.0
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 2.4e-32 142.9 169 50.3
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 9.1e-32 141.0 166 47.0
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 9.1e-32 141.0 161 49.1
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.8e-30 135.6 137 52.6
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.1e-28 129.8 137 51.8
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 1.0e-27 127.5 165 44.8
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.0e-27 127.5 166 45.2
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 2.2e-25 119.8 167 43.7
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 2.2e-25 119.8 167 43.7
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 1.1e-24 117.5 170 41.8
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.1e-24 115.9 168 45.8
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 7.0e-24 114.8 167 41.9
Atru.chr6.2428 Acer truncatum HOM05D003450 ORTHO05D004150 1.6e-23 113.6 81 69.1
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 2.0e-23 113.2 173 43.9
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 1.3e-22 110.5 144 46.5
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 3.8e-22 109.0 141 47.5
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 1.5e-21 107.1 166 39.8
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 4.3e-21 105.5 165 39.4
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 4.3e-21 105.5 167 40.1
TPR.G33244 Trifolium pratense HOM05D003450 ORTHO05D004150 2.1e-20 103.2 115 52.2
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 2.0e-18 96.7 102 49.0
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 2.6e-18 96.3 126 48.4
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 2.3e-11 73.2 174 33.9
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 3.4e-10 69.3 53 62.3
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 4.9e-09 65.5 195 31.8
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 3.0e-06 56.2 43 65.1
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 6.6e-06 55.1 48 64.6


User provided reference genes

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