Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 0.0e+00 1540.8 784 100.0
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1201.0 782 76.9
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 0.0e+00 1196.8 784 76.1
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1195.3 784 75.5
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 0.0e+00 1194.9 784 76.0
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 0.0e+00 1193.7 784 75.9
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 0.0e+00 1193.3 784 75.8
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1192.2 784 75.3
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 0.0e+00 1191.0 784 76.0
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 0.0e+00 1190.3 784 75.3
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 0.0e+00 1187.9 782 74.9
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 0.0e+00 1186.0 784 75.0
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 0.0e+00 1178.3 784 74.7
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 0.0e+00 1174.5 784 74.7
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 0.0e+00 1169.8 784 74.7
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 0.0e+00 1167.1 779 74.2
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 0.0e+00 1166.4 784 74.1
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1161.4 780 72.7
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1161.0 780 72.6
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1161.0 780 73.3
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 0.0e+00 1160.6 784 73.5
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 0.0e+00 1160.2 783 73.7
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1159.8 780 72.6
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 0.0e+00 1159.4 785 73.8
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 0.0e+00 1158.3 784 73.7
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 0.0e+00 1157.5 758 75.6
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 0.0e+00 1156.4 779 74.3
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1156.0 784 74.5
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1156.0 780 73.2
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 0.0e+00 1155.2 778 73.4
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 0.0e+00 1154.0 779 73.0
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 0.0e+00 1154.0 778 74.4
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 0.0e+00 1153.3 784 72.6
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 0.0e+00 1152.1 759 75.0
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 0.0e+00 1142.9 779 72.9
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 0.0e+00 1140.6 784 71.7
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1139.0 784 71.8
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 0.0e+00 1137.9 794 71.9
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1137.1 780 72.1
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1136.3 784 71.9
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 0.0e+00 1135.2 776 72.6
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1132.5 780 71.4
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 0.0e+00 1132.1 784 72.1
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 0.0e+00 1130.2 780 71.4
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1129.8 780 71.3
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 0.0e+00 1129.4 784 71.2
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 0.0e+00 1129.0 783 71.6
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1128.2 780 71.5
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 0.0e+00 1127.9 782 71.7
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 0.0e+00 1126.7 780 71.9
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 0.0e+00 1126.7 782 71.7
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 0.0e+00 1125.2 784 71.0
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 0.0e+00 1124.0 784 71.8
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1124.0 783 70.5
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1118.2 780 70.5
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1116.7 788 70.1
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1115.9 788 70.2
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 0.0e+00 1115.9 784 70.7
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 0.0e+00 1115.1 780 71.8
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 0.0e+00 1112.8 759 72.5
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 0.0e+00 1109.7 784 70.0
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 0.0e+00 1107.0 803 68.4
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 0.0e+00 1102.8 778 69.8
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1100.5 779 70.1
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1098.6 779 69.4
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 0.0e+00 1098.6 779 69.8
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 0.0e+00 1098.6 780 69.2
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 0.0e+00 1097.4 779 69.7
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1096.6 779 69.4
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 0.0e+00 1096.3 779 69.4
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 0.0e+00 1095.1 784 69.9
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 0.0e+00 1094.0 780 69.4
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1093.6 778 68.6
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1092.0 780 69.2
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 0.0e+00 1092.0 780 69.4
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 0.0e+00 1092.0 779 69.6
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1090.9 780 69.4
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 0.0e+00 1083.2 779 68.8
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1083.2 807 68.2
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 0.0e+00 1077.4 779 68.7
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 8.0e-311 1070.1 781 68.2
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 4.1e-310 1067.8 782 68.3
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 7.6e-309 1063.5 795 67.5
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.2e-306 1056.2 783 68.5
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 1.6e-306 1055.8 792 67.3
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 1.6e-306 1055.8 785 67.6
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 1.6e-306 1055.8 948 60.3
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 2.1e-306 1055.4 792 67.2
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.3e-304 1048.1 738 70.1
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 1.3e-303 1046.2 780 67.8
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 2.2e-303 1045.4 779 68.8
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 1.0e-300 1036.6 779 68.0
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 3.4e-293 1011.5 784 65.3
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 2.5e-291 1005.4 780 65.3
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 2.6e-288 995.3 781 65.0
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 2.6e-288 995.3 780 65.0
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 9.1e-286 986.9 782 61.4
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 1.2e-285 986.5 772 64.9
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 5.5e-283 977.6 780 63.1
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.1e-282 975.7 780 62.9
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.2e-280 969.9 780 62.8
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.4e-278 963.0 782 63.3
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 4.0e-273 944.9 786 59.3
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.2e-272 943.3 779 59.7
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 5.0e-260 901.4 759 60.6
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.1e-251 873.6 681 68.6
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.9e-246 856.3 785 55.5
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.4e-241 840.1 737 56.4
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 4.4e-240 835.1 746 55.8
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 8.6e-236 820.8 749 55.1
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 1.1e-233 813.9 800 51.9
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 6.8e-233 811.2 780 53.8
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 3.8e-231 805.4 746 54.8
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.3e-227 792.3 747 53.7
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 7.3e-227 791.2 746 53.1
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.3e-222 774.2 670 58.5
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 5.3e-209 731.9 666 55.9
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.6e-200 703.0 778 48.8
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 3.9e-180 636.0 426 73.2
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 6.5e-159 565.5 409 71.4
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 6.1e-149 532.3 372 72.0
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 2.7e-144 516.9 361 70.4
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 1.2e-136 491.5 286 87.4
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 5.2e-132 476.1 803 35.0
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.5e-99 368.2 314 56.1
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 4.5e-99 366.7 326 62.3
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 3.0e-95 354.0 446 46.4
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.8e-91 339.7 248 66.5
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 6.3e-77 293.1 277 56.7
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 2.5e-73 281.2 194 74.2
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 7.2e-73 279.6 191 71.7
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.8e-71 275.0 230 61.7
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.7e-61 241.9 173 72.8
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 6.3e-61 240.0 159 73.0
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 6.1e-56 223.4 175 63.4
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 6.3e-45 186.8 181 55.8
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 8.3e-45 186.4 202 50.0
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.5e-43 180.6 133 64.7
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 1.4e-36 159.1 105 70.5
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 1.4e-36 159.1 105 70.5
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.5e-33 149.1 336 30.4
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 9.8e-30 136.3 130 53.1
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 2.2e-29 135.2 79 77.2
Cre16.g647500 Chlamydomonas reinhardtii HOM05D004235 ORTHO05D005157 1.9e-25 122.1 171 35.7
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.4e-20 104.0 67 68.7
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 9.2e-20 103.2 55 89.1
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.1e-17 96.3 96 57.3
Oeu052121.2 Olea europaea HOM05D000101 ORTHO05D000089 4.7e-16 90.9 99 49.5
SEGI_38347 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.3e-10 72.0 63 50.8
SEGI_21772 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 3.9e-10 71.2 88 45.5
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 2.5e-09 68.6 61 59.0
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.6e-08 64.7 40 75.0
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 3.6e-08 64.7 60 56.7
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 3.6e-08 64.7 51 58.8
PGSC0003DMG400043958 Solanum tuberosum HOM05D004235 ORTHO05D005157 6.2e-08 63.9 135 32.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.0e-06 58.9 89 42.7


User provided reference genes

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