Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 2.5e-33 144.8 71 100.0
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 5.6e-33 143.7 71 98.6
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 88.4
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 2.3e-26 121.7 68 83.8
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 8.6e-26 119.8 68 82.4
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 8.6e-26 119.8 68 82.4
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.1e-25 119.4 68 82.4
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.5e-25 119.0 68 82.4
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.5e-25 118.2 67 82.1
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 2.5e-25 118.2 67 80.6
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 3.3e-25 117.9 68 80.9
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 5.6e-25 117.1 68 77.9
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 7.3e-25 116.7 68 79.4
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 7.3e-25 116.7 69 79.7
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 9.5e-25 116.3 68 79.4
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 1.2e-24 115.9 68 77.9
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 1.2e-24 115.9 68 76.5
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 1.6e-24 115.5 68 77.9
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.6e-24 115.5 69 72.5
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.1e-24 115.2 68 76.5
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 69 78.3
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 69 78.3
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 69 78.3
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.8e-24 114.8 65 80.0
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 3.6e-24 114.4 68 75.0
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.7e-24 114.0 68 76.5
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 4.7e-24 114.0 66 80.3
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 4.7e-24 114.0 66 80.3
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 4.7e-24 114.0 68 75.0
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 4.7e-24 114.0 69 76.8
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.2e-24 113.6 68 76.5
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.2e-24 113.6 68 76.5
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 8.0e-24 113.2 66 78.8
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 8.0e-24 113.2 66 78.8
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 8.0e-24 113.2 68 73.5
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 8.0e-24 113.2 69 71.0
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 8.0e-24 113.2 69 71.0
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 8.0e-24 113.2 68 75.0
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 8.0e-24 113.2 68 75.0
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 8.0e-24 113.2 68 72.1
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 75.0
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 75.0
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 73.5
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 75.0
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.1e-23 112.8 66 75.8
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.4e-23 112.5 68 73.5
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 1.4e-23 112.5 67 76.1
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 1.4e-23 112.5 68 75.0
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.4e-23 112.5 65 76.9
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 1.8e-23 112.1 66 78.8
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 1.8e-23 112.1 68 75.0
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 1.8e-23 112.1 68 75.0
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 2.3e-23 111.7 68 75.0
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 3.1e-23 111.3 68 73.5
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 3.1e-23 111.3 68 72.1
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 4.0e-23 110.9 66 77.3
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 4.0e-23 110.9 68 73.5
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 4.0e-23 110.9 68 73.5
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 4.0e-23 110.9 68 73.5
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 4.0e-23 110.9 68 73.5
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 4.0e-23 110.9 68 72.1
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 5.2e-23 110.5 68 72.1
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 5.2e-23 110.5 66 77.3
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 5.2e-23 110.5 70 72.9
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 6.8e-23 110.2 68 73.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 6.8e-23 110.2 61 83.6
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 6.8e-23 110.2 66 77.3
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 6.8e-23 110.2 68 72.1
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 6.8e-23 110.2 68 72.1
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 8.9e-23 109.8 68 73.5
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 8.9e-23 109.8 61 82.0
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 8.9e-23 109.8 65 78.5
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 8.9e-23 109.8 68 70.6
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 8.9e-23 109.8 68 70.6
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 8.9e-23 109.8 60 85.0
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.2e-22 109.4 68 72.1
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 1.2e-22 109.4 68 72.1
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.2e-22 109.4 68 73.5
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 1.2e-22 109.4 68 70.6
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 1.2e-22 109.4 67 74.6
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 1.2e-22 109.4 68 70.6
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-22 109.0 68 72.1
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-22 109.0 68 72.1
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-22 109.0 68 72.1
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-22 109.0 68 72.1
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 1.5e-22 109.0 60 83.3
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 1.5e-22 109.0 60 83.3
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 1.5e-22 109.0 66 74.2
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 2.0e-22 108.6 66 75.8
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 2.0e-22 108.6 66 75.8
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 2.0e-22 108.6 66 75.8
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 2.0e-22 108.6 68 72.1
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.0e-22 108.6 60 81.7
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 2.0e-22 108.6 62 80.6
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 2.0e-22 108.6 62 79.0
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.6e-22 108.2 68 69.1
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 2.6e-22 108.2 68 72.1
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 2.6e-22 108.2 65 75.4
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 2.6e-22 108.2 62 79.0
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 3.4e-22 107.8 68 70.6
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 3.4e-22 107.8 68 70.6
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 4.4e-22 107.5 68 73.5
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 4.4e-22 107.5 60 81.7
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 4.4e-22 107.5 69 71.0
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 5.8e-22 107.1 65 73.8
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 5.8e-22 107.1 67 71.6
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.8e-22 107.1 60 81.7
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 5.8e-22 107.1 68 70.6
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 7.5e-22 106.7 68 69.1
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 7.5e-22 106.7 62 75.8
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 9.8e-22 106.3 66 69.7
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 9.8e-22 106.3 60 80.0
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 1.3e-21 105.9 64 71.9
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.3e-21 105.9 62 77.4
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 1.7e-21 105.5 63 76.2
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 1.7e-21 105.5 62 77.4
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 2.2e-21 105.1 70 65.7
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 2.2e-21 105.1 61 78.7
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 3.7e-21 104.4 62 75.8
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.9e-21 104.0 63 73.0
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 4.9e-21 104.0 66 71.2
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 4.9e-21 104.0 64 70.3
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 6.4e-21 103.6 64 73.4
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 6.4e-21 103.6 61 75.4
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.4e-21 103.6 63 71.4
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 6.4e-21 103.6 69 68.1
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 6.4e-21 103.6 69 68.1
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 6.4e-21 103.6 66 71.2
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 8.3e-21 103.2 65 67.7
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.3e-21 103.2 60 76.7
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.1e-20 102.8 60 75.0
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 1.4e-20 102.4 61 75.4
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 1.4e-20 102.4 61 73.8
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.9e-20 102.1 64 71.9
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 1.9e-20 102.1 66 71.2
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 1.9e-20 102.1 61 73.8
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 2.4e-20 101.7 63 69.8
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 2.4e-20 101.7 60 78.3
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 2.4e-20 101.7 60 76.7
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 2.4e-20 101.7 62 74.2
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 2.4e-20 101.7 62 74.2
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.4e-20 101.7 60 73.3
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 7.0e-20 100.1 60 73.3
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 7.0e-20 100.1 60 76.7
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 9.2e-20 99.8 63 74.6
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 2.1e-19 98.6 62 71.0
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 2.1e-19 98.6 64 71.9
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 2.1e-19 98.6 57 82.5
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 2.1e-19 98.6 67 67.2
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 2.1e-19 98.6 59 74.6
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 2.1e-19 98.6 61 70.5
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 7.8e-19 96.7 59 72.9
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.7e-18 95.5 62 69.4
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.1e-17 92.8 61 73.8
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.1e-17 92.8 62 71.0
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 4.3e-17 90.9 63 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.1e-16 88.6 63 58.7
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 4.7e-16 87.4 46 87.0
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 8.1e-16 86.7 47 83.0
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 2.3e-15 85.1 57 70.2
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 6.8e-15 83.6 48 75.0
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 6.8e-15 83.6 53 71.7
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 7.5e-14 80.1 44 84.1
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 7.5e-14 80.1 57 56.1
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.3e-13 79.3 66 57.6
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.3e-13 79.3 64 53.1
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 2.2e-13 78.6 65 52.3
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 2.2e-13 78.6 60 55.0
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 4.9e-13 77.4 64 54.7
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.1e-12 76.3 61 57.4
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 5.4e-12 73.9 55 60.0
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 1.1e-09 66.2 39 76.9
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 2.1e-08 62.0 62 46.8
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 8.1e-08 60.1 56 46.4
Zm00001eb387680 Zea mays HOM05D004074 ORTHO05D441439 7.6e-06 53.5 58 48.3


User provided reference genes

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