Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 4.9e-84 314.7 190 100.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 4.6e-58 228.4 205 64.4
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 6.2e-39 164.9 201 53.2
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 8.1e-39 164.5 194 54.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.8e-38 163.3 204 50.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 5.3e-38 161.8 209 48.8
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.5e-37 160.2 197 48.2
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.0e-37 159.8 200 48.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.6e-37 159.5 164 54.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 5.8e-37 158.3 200 50.5
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.3e-36 157.1 220 47.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.3e-36 157.1 165 62.4
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.7e-36 156.8 205 47.3
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-36 156.4 204 52.9
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 3.8e-36 155.6 204 48.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 4.9e-36 155.2 204 49.5
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 4.9e-36 155.2 163 55.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 8.4e-36 154.5 207 55.6
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.1e-35 154.1 201 46.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.1e-35 154.1 170 53.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.4e-35 153.7 206 47.6
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.4e-35 153.7 159 60.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.4e-35 153.7 166 56.0
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.5e-35 152.9 163 55.2
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.2e-35 152.5 207 54.1
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.2e-35 152.1 166 60.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 4.2e-35 152.1 160 54.4
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 5.5e-35 151.8 162 58.6
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 5.5e-35 151.8 211 47.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 5.5e-35 151.8 192 55.2
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-34 150.6 197 51.8
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.2e-34 150.6 204 48.0
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.6e-34 150.2 199 49.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.6e-34 150.2 176 51.7
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.6e-34 150.2 159 61.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.1e-34 149.8 206 48.1
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.7e-34 149.4 159 59.1
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 3.5e-34 149.1 207 55.6
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 3.5e-34 149.1 207 51.7
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.5e-34 149.1 177 51.4
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 4.6e-34 148.7 177 51.4
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.0e-34 148.3 187 51.9
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.0e-34 148.3 179 49.2
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 6.0e-34 148.3 159 57.2
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 7.9e-34 147.9 194 54.6
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.0e-33 147.5 159 61.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.0e-33 147.5 209 53.1
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.8e-33 146.7 165 53.3
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.8e-33 146.7 204 47.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.8e-33 146.7 159 64.2
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.3e-33 146.4 206 51.9
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 3.0e-33 146.0 198 52.5
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.9e-33 145.6 167 52.1
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 5.1e-33 145.2 165 52.7
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 5.1e-33 145.2 172 51.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.1e-33 145.2 159 57.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 6.7e-33 144.8 198 53.0
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 6.7e-33 144.8 160 60.0
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 6.7e-33 144.8 160 60.0
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 6.7e-33 144.8 199 52.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 6.7e-33 144.8 206 52.4
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.7e-33 144.8 83 83.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.1e-32 144.1 215 45.1
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.1e-32 144.1 159 57.2
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.5e-32 143.7 215 51.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.5e-32 143.7 116 65.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-32 143.7 218 45.0
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-32 143.7 204 55.4
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.5e-32 143.7 159 66.7
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.9e-32 143.3 159 56.6
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.9e-32 143.3 206 56.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.9e-32 143.3 204 55.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.9e-32 143.3 119 64.7
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.9e-32 143.3 210 45.7
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.5e-32 142.9 81 82.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 3.3e-32 142.5 167 50.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.3e-32 142.5 159 60.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 5.7e-32 141.7 206 52.4
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 5.7e-32 141.7 191 49.7
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 7.4e-32 141.4 167 50.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 7.4e-32 141.4 166 53.0
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 7.4e-32 141.4 175 57.7
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 7.4e-32 141.4 178 48.3
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 9.6e-32 141.0 196 53.1
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 9.6e-32 141.0 210 49.5
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 9.6e-32 141.0 167 50.3
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 9.6e-32 141.0 222 44.6
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.3e-31 140.6 163 52.8
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.3e-31 140.6 197 54.8
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.3e-31 140.6 190 50.0
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.3e-31 140.6 164 50.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.6e-31 140.2 161 52.8
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.6e-31 140.2 159 52.8
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 2.1e-31 139.8 167 50.3
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.1e-31 139.8 194 45.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.1e-31 139.8 78 85.9
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.8e-31 139.4 192 50.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.8e-31 139.4 166 62.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.8e-31 139.4 163 49.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.8e-31 138.7 203 43.8
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 4.8e-31 138.7 188 45.2
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 6.3e-31 138.3 81 81.5
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 8.2e-31 137.9 160 61.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 8.2e-31 137.9 163 50.3
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 8.2e-31 137.9 81 80.2
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.2e-31 137.9 190 45.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-31 137.9 155 67.1
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 8.2e-31 137.9 164 48.8
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.1e-30 137.5 159 50.9
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.1e-30 137.5 213 43.7
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.4e-30 137.1 198 56.1
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.4e-30 136.3 200 54.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.4e-30 136.3 161 53.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.4e-30 136.3 160 56.9
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.4e-30 136.3 195 51.3
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 4.1e-30 135.6 206 45.6
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.1e-30 135.6 70 92.9
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.1e-30 135.6 186 48.4
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 5.3e-30 135.2 163 60.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.2e-29 134.0 82 80.5
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.0e-28 131.0 161 50.9
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.8e-28 129.0 75 81.3
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.1e-27 127.5 206 43.2
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.6e-26 123.6 69 81.2
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 3.5e-26 122.5 192 49.0
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 3.9e-25 119.0 148 62.2
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.5e-24 117.1 145 61.4
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 9.7e-24 114.4 187 45.5
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 4.1e-22 109.0 82 63.4
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 6.5e-20 101.7 95 54.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 3.2e-19 99.4 93 52.7
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.1e-18 96.7 57 78.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.7e-18 96.3 65 73.8
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 6.1e-18 95.1 95 52.6
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 6.1e-18 95.1 98 49.0
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.2e-13 80.9 125 41.6
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 2.0e-13 80.1 179 41.3
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 3.4e-13 79.3 121 49.6
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-12 76.6 122 42.6
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 6.5e-12 75.1 54 68.5
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 4.2e-11 72.4 132 53.8
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 2.3e-09 66.6 67 50.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 7.4e-08 61.6 39 64.1
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.7e-07 60.5 139 37.4
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.1e-06 56.2 127 44.1


User provided reference genes

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