Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 4.7e-112 407.9 209 100.0
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.6e-91 339.7 185 93.5
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 7.5e-86 320.9 209 79.9
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.1e-39 167.5 211 47.4
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.0e-38 163.3 213 47.4
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 2.6e-38 162.9 213 47.4
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.4e-38 162.2 211 47.4
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 9.9e-38 161.0 209 46.4
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.3e-37 160.6 217 48.8
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.3e-37 160.6 209 46.9
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.3e-37 160.6 216 47.7
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.7e-37 160.2 209 45.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 2.2e-37 159.8 209 46.4
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.9e-37 159.5 212 46.2
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.1e-36 157.5 209 45.9
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.4e-36 157.1 212 46.2
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.9e-36 156.8 210 45.7
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.9e-36 156.8 217 47.5
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 2.4e-36 156.4 209 45.9
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 3.2e-36 156.0 212 46.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 3.2e-36 156.0 209 45.5
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.2e-36 155.6 223 46.2
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 9.3e-36 154.5 209 44.5
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 9.3e-36 154.5 209 44.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 9.3e-36 154.5 217 46.1
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 9.3e-36 154.5 206 45.1
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.2e-35 154.1 212 45.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.2e-35 154.1 207 44.0
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.2e-35 154.1 209 46.4
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.2e-35 154.1 215 44.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-35 153.7 215 44.7
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.6e-35 153.7 224 46.0
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.1e-35 153.3 211 45.0
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.7e-35 152.9 209 44.0
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.5e-35 152.5 215 42.3
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 3.5e-35 152.5 214 44.9
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 4.6e-35 152.1 214 44.4
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 4.6e-35 152.1 217 42.4
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.0e-34 151.0 214 46.7
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.3e-34 150.6 210 43.8
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.3e-34 150.6 214 43.5
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.3e-34 150.6 188 49.5
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.7e-34 150.2 213 46.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.7e-34 150.2 210 44.8
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-34 150.2 214 44.9
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.3e-34 149.8 220 45.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 2.3e-34 149.8 212 45.3
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.3e-34 149.8 220 44.1
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.0e-34 149.4 214 42.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-34 149.4 205 42.9
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 3.9e-34 149.1 211 45.5
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 5.1e-34 148.7 209 45.0
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.6e-34 148.3 211 45.0
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.6e-34 148.3 216 44.0
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 8.7e-34 147.9 221 45.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-33 147.5 216 44.9
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.5e-33 147.1 216 44.4
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.9e-33 146.7 214 43.0
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-33 146.7 216 45.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.5e-33 146.4 216 44.4
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 3.3e-33 146.0 216 42.6
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.3e-33 145.6 211 41.2
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 7.3e-33 144.8 216 44.0
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 9.6e-33 144.4 222 41.4
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 9.6e-33 144.4 213 44.6
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.6e-32 143.7 191 48.2
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.1e-32 143.3 211 46.0
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.8e-32 142.9 213 44.1
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.6e-32 142.5 217 41.0
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.6e-32 142.5 191 46.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.2e-32 141.7 213 44.1
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 6.2e-32 141.7 199 45.7
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.1e-32 141.4 184 47.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 1.1e-31 141.0 188 47.3
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.1e-31 141.0 212 42.0
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.1e-31 141.0 191 48.2
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.4e-31 140.6 220 44.1
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 3.1e-31 139.4 218 45.0
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 3.1e-31 139.4 215 41.9
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 4.0e-31 139.0 198 46.5
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 5.3e-31 138.7 189 47.1
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 5.3e-31 138.7 209 41.1
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 9.0e-31 137.9 218 43.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 2.0e-30 136.7 186 45.2
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 3.4e-30 136.0 188 47.3
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.4e-30 136.0 193 46.6
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 4.5e-30 135.6 189 46.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 5.8e-30 135.2 218 41.3
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.8e-30 135.2 191 44.5
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 7.6e-30 134.8 214 44.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 9.9e-30 134.4 213 40.8
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.3e-29 134.0 220 40.9
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 1.7e-29 133.7 228 39.9
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.7e-29 133.7 184 46.7
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.2e-29 133.3 225 41.8
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.9e-29 132.9 217 42.4
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 6.4e-29 131.7 215 41.4
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 6.4e-29 131.7 209 39.7
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 6.4e-29 131.7 217 41.9
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 8.4e-29 131.3 186 44.6
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 8.4e-29 131.3 210 40.0
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.4e-28 130.6 196 42.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 1.4e-28 130.6 197 43.1
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 1.4e-28 130.6 210 42.9
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.4e-28 130.6 211 43.1
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 2.4e-28 129.8 220 40.5
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 3.2e-28 129.4 201 42.3
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 4.2e-28 129.0 188 44.7
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 7.1e-28 128.3 226 40.7
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 9.3e-28 127.9 215 38.1
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 9.3e-28 127.9 213 40.4
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 9.3e-28 127.9 189 44.4
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.6e-27 127.1 212 40.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.6e-27 127.1 202 43.1
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.1e-27 126.7 217 41.0
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.7e-27 126.3 226 39.8
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 3.5e-27 125.9 191 46.1
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 6.0e-27 125.2 212 40.1
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 6.0e-27 125.2 196 43.9
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 7.9e-27 124.8 209 36.8
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.0e-26 124.4 260 35.0
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.3e-26 124.0 209 38.8
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.8e-26 123.6 210 38.6
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.8e-26 123.6 210 37.1
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.8e-26 123.6 210 37.1
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.8e-26 123.6 210 37.1
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.3e-26 123.2 184 42.9
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 2.3e-26 123.2 184 40.2
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 3.0e-26 122.9 214 42.1
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 3.9e-26 122.5 209 40.7
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.9e-26 122.5 227 37.0
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 6.7e-26 121.7 209 37.3
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 1.9e-25 120.2 209 37.8
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 2.5e-25 119.8 211 40.8
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 5.6e-25 118.6 190 46.3
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 5.6e-25 118.6 193 41.5
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.6e-24 117.1 213 39.9
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.2e-24 115.2 197 41.6
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 8.1e-24 114.8 210 38.6
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.1e-23 114.4 199 41.7
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 2.4e-23 113.2 184 38.6
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 5.8e-22 108.6 184 39.1
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 2.9e-21 106.3 103 59.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.9e-21 105.5 213 39.4
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.1e-20 104.4 222 36.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.4e-20 104.0 185 40.0
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 2.5e-20 103.2 212 40.1
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 7.1e-20 101.7 223 37.7
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.6e-19 100.5 214 39.7
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-19 100.5 212 38.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.6e-19 100.5 219 37.0
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 2.1e-19 100.1 217 36.9
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 2.7e-19 99.8 221 38.0
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.7e-19 99.8 203 39.9
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 4.6e-19 99.0 186 36.0
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 7.9e-19 98.2 193 38.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.0e-18 97.8 214 39.3
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.3e-18 97.4 187 39.6
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 1.1e-17 94.4 184 38.6
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 5.7e-17 92.0 221 33.9
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.4e-15 86.7 170 36.5
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 3.4e-14 82.8 238 33.2
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.3e-13 80.9 226 32.3
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.2e-13 80.1 97 48.5
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 3.2e-12 76.3 151 36.4
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 4.8e-08 62.4 170 33.5
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.4e-07 60.8 170 32.9
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 1.4e-07 60.8 231 31.6
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 2.4e-07 60.1 89 41.6
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 4.1e-07 59.3 203 33.0
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 3.4e-06 56.2 169 34.3


User provided reference genes

Program Settings