Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 8.2e-151 537.0 257 100.0
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 2.9e-71 272.7 174 70.7
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 3.8e-71 272.3 175 72.0
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 4.1e-70 268.9 174 69.0
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 5.4e-70 268.5 205 57.6
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 9.2e-70 267.7 202 60.4
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 9.2e-70 267.7 203 59.6
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 1.6e-69 266.9 205 59.0
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 4.6e-69 265.4 208 59.6
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.3e-68 263.8 172 68.6
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 1.7e-68 263.5 200 59.5
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 3.0e-68 262.7 203 59.1
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 3.9e-68 262.3 205 58.0
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 3.9e-68 262.3 205 58.0
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 3.9e-68 262.3 214 55.1
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 5.1e-68 261.9 203 59.6
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 5.1e-68 261.9 203 57.6
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 5.1e-68 261.9 203 58.1
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 5.1e-68 261.9 203 57.6
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 5.1e-68 261.9 203 57.6
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 6.6e-68 261.5 172 68.6
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 8.6e-68 261.2 200 59.0
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.5e-67 260.4 203 58.6
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 3.3e-67 259.2 205 58.5
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 3.3e-67 259.2 203 58.1
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 4.3e-67 258.8 203 59.1
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 5.6e-67 258.5 194 59.8
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 5.6e-67 258.5 200 59.5
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 9.6e-67 257.7 203 57.6
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 9.6e-67 257.7 203 58.6
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.6e-66 256.9 203 56.7
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.6e-66 256.9 203 58.6
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.6e-66 256.9 175 64.6
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 4.7e-66 255.4 203 57.6
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 1.4e-65 253.8 203 57.1
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 1.8e-65 253.4 174 64.4
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 3.1e-65 252.7 203 56.7
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 5.2e-65 251.9 206 57.3
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 5.2e-65 251.9 176 65.9
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 8.9e-65 251.1 202 57.9
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 1.5e-64 250.4 204 56.9
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 2.0e-64 250.0 203 57.6
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 2.6e-64 249.6 205 56.1
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 2.6e-64 249.6 197 57.9
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 5.8e-64 248.4 207 55.6
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 5.8e-64 248.4 204 58.3
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 7.6e-64 248.1 194 60.8
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 9.9e-64 247.7 207 55.6
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 2.9e-63 246.1 194 59.3
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 3.8e-63 245.7 179 61.5
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 4.9e-63 245.4 222 54.1
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 8.4e-63 244.6 234 49.6
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 1.1e-62 244.2 204 56.4
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 3.2e-62 242.7 179 62.0
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 3.2e-62 242.7 207 54.6
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.2e-61 240.7 173 64.2
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 6.0e-61 238.4 175 63.4
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 6.0e-61 238.4 174 60.9
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 3.0e-60 236.1 174 62.1
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 1.1e-59 234.2 205 53.2
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 1.1e-59 234.2 195 57.4
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.9e-59 233.4 174 59.8
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 3.3e-59 232.6 213 53.1
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 7.3e-59 231.5 203 54.7
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 3.6e-58 229.2 207 52.2
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 4.8e-58 228.8 203 54.2
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.4e-57 227.3 203 53.7
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.4e-57 227.3 203 53.2
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.8e-57 226.9 203 54.7
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 2.4e-57 226.5 194 56.2
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 5.3e-57 225.3 203 53.7
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 2.0e-56 223.4 197 55.3
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 2.6e-56 223.0 178 59.6
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 2.6e-56 223.0 247 45.3
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 1.7e-55 220.3 172 59.9
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.9e-55 219.5 203 51.7
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.8e-55 219.2 174 57.5
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.8e-55 219.2 174 57.5
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 8.4e-55 218.0 207 50.7
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 1.4e-54 217.2 203 52.2
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 5.4e-54 215.3 203 50.2
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 7.1e-54 214.9 149 67.1
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 9.3e-54 214.5 223 48.9
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 3.5e-53 212.6 194 53.6
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 3.5e-53 212.6 174 58.6
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 3.9e-52 209.1 202 50.5
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.9e-51 206.8 207 49.8
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 4.3e-51 205.7 232 46.1
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 5.6e-51 205.3 174 56.9
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 7.4e-51 204.9 172 55.2
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 7.4e-51 204.9 172 54.7
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 7.4e-51 204.9 208 49.0
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.6e-50 203.8 205 48.8
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 1.6e-50 203.8 203 50.2
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 3.7e-50 202.6 232 44.8
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 1.1e-49 201.1 203 47.8
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 1.5e-48 197.2 172 53.5
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 4.5e-48 195.7 205 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 7.6e-48 194.9 175 50.3
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.3e-47 194.1 205 46.8
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.9e-47 193.0 206 48.1
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 2.9e-47 193.0 206 48.1
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 2.9e-47 193.0 143 67.8
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 3.8e-47 192.6 205 46.3
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 3.8e-47 192.6 206 47.6
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 4.9e-47 192.2 206 47.6
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.0e-44 184.5 203 46.3
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 1.5e-43 180.6 172 50.0
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 5.6e-43 178.7 203 45.3
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.7e-42 176.0 203 44.8
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 1.1e-41 174.5 168 47.6
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-40 170.2 111 68.5
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.6e-40 169.9 174 47.7
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.5e-40 169.1 172 48.3
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 8.4e-39 164.9 205 41.5
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 9.3e-38 161.4 139 54.7
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 7.9e-37 158.3 176 47.7
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 6.7e-36 155.2 174 43.7
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 1.9e-35 153.7 137 51.1
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 5.0e-31 139.0 96 64.6
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 9.3e-30 134.8 205 39.5
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 1.3e-26 124.4 232 32.3
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 4.1e-25 119.4 82 64.6
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 1.3e-23 114.4 107 48.6
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 5.7e-19 99.0 177 34.5
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.1e-17 93.2 170 33.5
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.0e-15 88.2 81 50.6
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 8.5e-15 85.1 80 47.5
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-14 82.4 74 50.0
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 5.5e-14 82.4 50 68.0
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 1.1e-11 74.7 91 40.7
Cre06.g278176 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D034408 5.0e-07 59.3 124 28.2
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 2.5e-06 57.0 138 31.9


User provided reference genes

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