Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 9.8e-69 263.5 144 100.0
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 4.7e-63 244.6 137 97.1
Zm00001eb272060 Zea mays HOM05D009386 ORTHO05D011419 7.3e-48 194.1 112 96.4
Zm00001eb427350 Zea mays HOM05D009386 ORTHO05D011419 7.3e-48 194.1 112 96.4
Zm00001eb442850 Zea mays HOM05D009386 ORTHO05D011419 7.3e-48 194.1 112 96.4
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 9.5e-48 193.7 137 77.4
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 7.6e-29 131.0 138 54.3
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 3.2e-27 125.6 138 51.4
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 4.1e-27 125.2 139 49.6
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 7.8e-26 120.9 139 48.2
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 7.8e-26 120.9 140 50.7
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 3.0e-25 119.0 138 51.4
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 3.9e-25 118.6 139 46.8
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.9e-25 118.6 139 47.5
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 3.9e-25 118.6 140 50.7
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 6.6e-25 117.9 140 50.0
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 3.3e-24 115.5 138 47.8
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 3.3e-24 115.5 139 48.9
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 4.3e-24 115.2 138 45.7
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 4.3e-24 115.2 140 48.6
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 5.6e-24 114.8 137 50.4
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 1.2e-23 113.6 138 50.7
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 1.2e-23 113.6 138 44.9
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 1.6e-23 113.2 137 46.0
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 1.6e-23 113.2 138 48.6
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.6e-23 113.2 139 46.8
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 1.6e-23 113.2 139 47.5
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 2.1e-23 112.8 139 44.6
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 2.8e-23 112.5 138 50.7
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 3.6e-23 112.1 139 46.8
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 3.6e-23 112.1 139 46.8
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 4.7e-23 111.7 139 46.8
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 8.1e-23 110.9 138 44.2
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 1.1e-22 110.5 138 45.7
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.4e-22 110.2 138 50.7
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 4.0e-22 108.6 139 45.3
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 5.2e-22 108.2 138 47.8
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 6.9e-22 107.8 139 46.8
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 1.2e-21 107.1 137 50.4
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.2e-21 107.1 138 48.6
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.5e-21 106.7 139 45.3
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 2.6e-21 105.9 139 46.0
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 2.6e-21 105.9 139 44.6
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 5.8e-21 104.8 136 47.8
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 7.6e-21 104.4 139 45.3
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 7.6e-21 104.4 135 48.9
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 7.6e-21 104.4 136 50.0
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 7.6e-21 104.4 137 48.2
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 9.9e-21 104.0 138 44.2
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 1.3e-20 103.6 139 42.4
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.7e-20 103.2 138 46.4
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 1.7e-20 103.2 137 47.4
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 2.2e-20 102.8 128 50.0
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 2.2e-20 102.8 137 46.0
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 2.2e-20 102.8 137 46.0
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 2.9e-20 102.4 138 46.4
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 2.9e-20 102.4 137 46.0
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 4.9e-20 101.7 139 44.6
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 6.4e-20 101.3 139 44.6
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 8.4e-20 100.9 139 43.2
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 8.4e-20 100.9 137 43.1
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 2.4e-19 99.4 137 46.7
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 3.2e-19 99.0 137 46.7
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 3.2e-19 99.0 138 43.5
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 3.2e-19 99.0 136 43.4
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 4.2e-19 98.6 137 43.8
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 4.2e-19 98.6 139 44.6
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 5.4e-19 98.2 138 44.2
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 9.3e-19 97.4 137 45.3
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 9.3e-19 97.4 139 46.0
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 9.3e-19 97.4 138 45.7
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 9.3e-19 97.4 138 46.4
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 1.2e-18 97.1 137 45.3
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.2e-18 97.1 136 42.6
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 2.7e-18 95.9 139 41.7
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 2.7e-18 95.9 138 42.8
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 3.5e-18 95.5 138 45.7
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 3.5e-18 95.5 137 43.8
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 6.0e-18 94.7 137 43.1
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 6.0e-18 94.7 137 43.8
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 7.8e-18 94.4 137 43.8
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 1.0e-17 94.0 140 42.9
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.7e-17 93.2 138 40.6
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 3.0e-17 92.4 137 42.3
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 3.9e-17 92.0 138 42.0
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 3.9e-17 92.0 139 43.2
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 3.9e-17 92.0 138 44.2
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 3.9e-17 92.0 137 41.6
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 5.1e-17 91.7 138 42.8
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 5.1e-17 91.7 139 41.0
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 5.1e-17 91.7 139 41.7
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 6.6e-17 91.3 137 42.3
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 8.7e-17 90.9 138 42.8
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 8.7e-17 90.9 138 42.0
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.5e-16 90.1 142 40.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.9e-16 89.7 140 41.4
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 2.5e-16 89.4 138 42.0
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 3.3e-16 89.0 140 41.4
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 3.3e-16 89.0 137 42.3
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 4.3e-16 88.6 137 38.0
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 7.3e-16 87.8 138 37.7
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.3e-15 87.0 138 38.4
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 1.3e-15 87.0 139 40.3
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.6e-15 86.7 137 40.9
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.6e-15 86.7 137 40.1
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.6e-15 86.7 139 38.8
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 1.6e-15 86.7 137 40.9
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 1.6e-15 86.7 140 39.3
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.8e-15 85.9 137 39.4
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 1.4e-14 83.6 137 37.2
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.4e-14 82.8 137 38.7
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 6.9e-14 81.3 140 40.0
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 9.0e-14 80.9 137 39.4
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 1.5e-13 80.1 117 43.6
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 2.6e-13 79.3 42 95.2
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 9.9e-13 77.4 160 37.5
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.7e-12 76.6 112 42.9
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 2.2e-12 76.3 155 34.8
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.8e-12 75.5 131 35.1
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 8.4e-12 74.3 139 38.8
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 1.9e-11 73.2 137 38.0
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 2.4e-11 72.8 110 40.9
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 4.2e-11 72.0 138 36.2
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 1.2e-10 70.5 91 48.4
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.2e-10 70.5 56 62.5
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 2.1e-10 69.7 149 32.2
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 3.5e-10 68.9 139 35.3
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 3.9e-09 65.5 144 31.9
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 2.4e-06 56.2 38 68.4


User provided reference genes

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