Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb156960 Zea mays HOM05D000174 ORTHO05D000630 3.3e-98 362.1 236 100.0
Zm00001eb108210 Zea mays HOM05D000174 ORTHO05D000630 5.0e-30 135.6 112 68.8
Zm00001eb326170 Zea mays HOM05D000174 ORTHO05D000630 4.7e-28 129.0 225 43.6
Zm00001eb108200 Zea mays HOM05D000174 ORTHO05D000630 2.6e-26 123.2 111 64.9
Zm00001eb312310 Zea mays HOM05D000174 ORTHO05D000630 1.4e-19 100.9 85 67.1
Os07g0588600 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 8.6e-14 81.6 211 44.1
Actinidia34366 Actinidia chinensis HOM05D000174 ORTHO05D000630 4.3e-13 79.3 213 31.9
Dinv42227 Davidia involucrata HOM05D000174 ORTHO05D000630 1.6e-12 77.4 208 33.2
Actinidia08251 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.1e-12 77.0 211 32.7
MELO3C010813.2 Cucumis melo HOM05D000174 ORTHO05D000630 6.2e-12 75.5 106 43.4
Gorai.008G082500 Gossypium raimondii HOM05D000174 ORTHO05D000630 8.9e-11 71.6 219 27.9
MBI16_g27829_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 1.5e-10 70.9 204 31.9
ClCG08G016400 Citrullus lanatus HOM05D000174 ORTHO05D000630 4.4e-10 69.3 215 30.2
Lsat_1_v5_gn_1_24181 Lactuca sativa HOM05D000174 ORTHO05D000630 4.4e-10 69.3 215 30.2
SalBow7G2800 Salvia bowleyana HOM05D000174 ORTHO05D000630 4.4e-10 69.3 243 30.0
Migut.B00436 Erythranthe guttata HOM05D000174 ORTHO05D000630 5.8e-10 68.9 206 33.0
Gohir.D12G074400 Gossypium hirsutum HOM05D000174 ORTHO05D000630 7.6e-10 68.6 219 27.4
Actinidia10189 Actinidia chinensis HOM05D000174 ORTHO05D000630 9.9e-10 68.2 98 43.9
Lalb_Chr23g0267461 Lupinus albus HOM05D000174 ORTHO05D000630 9.9e-10 68.2 209 29.7
MD05G1098300 Malus domestica HOM05D000174 ORTHO05D000630 9.9e-10 68.2 219 30.6
Gohir.D11G207400 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.3e-09 67.8 231 27.7
DCAR_001685 Daucus carota HOM05D000174 ORTHO05D000630 1.7e-09 67.4 219 30.1
Gohir.A12G075865 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.7e-09 67.4 219 27.4
Gorai.007G222500 Gossypium raimondii HOM05D000174 ORTHO05D000630 1.7e-09 67.4 207 29.0
Hma1.2p1_0210F.1_g089580 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 1.7e-09 67.4 245 29.8
TAR381G1385 Trochodendron aralioides HOM05D000174 ORTHO05D000630 1.7e-09 67.4 209 31.1
Carub.0008s2702 Capsella rubella HOM05D000174 ORTHO05D000630 2.2e-09 67.0 192 29.7
TAR625G1539 Trochodendron aralioides HOM05D000174 ORTHO05D000630 2.9e-09 66.6 204 29.4
MSTRG.27759 Avicennia marina HOM05D000174 ORTHO05D000630 3.7e-09 66.2 169 31.4
BcaB02g09924 Brassica carinata HOM05D000174 ORTHO05D000630 3.7e-09 66.2 194 28.4
COL.COLO4_11559 Corchorus olitorius HOM05D000174 ORTHO05D000630 3.7e-09 66.2 237 27.4
TAR628G1092 Trochodendron aralioides HOM05D000174 ORTHO05D000630 3.7e-09 66.2 204 31.9
Haze_22320 Corylus avellana HOM05D000174 ORTHO05D000630 4.9e-09 65.9 231 29.4
Duzib147G0978 Durio zibethinus HOM05D000174 ORTHO05D000630 4.9e-09 65.9 215 35.8
Hma1.2p1_1023F.1_g248850 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 6.4e-09 65.5 209 29.7
Hma1.2p1_1773F.1_g301705 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 6.4e-09 65.5 209 29.7
Gohir.A02G081300 Gossypium hirsutum HOM05D000174 ORTHO05D000630 8.4e-09 65.1 209 27.8
Gohir.A11G216000 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.1e-08 64.7 216 28.7
CiPaw.05G016600 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.4e-08 64.3 222 30.2
Sc15g0005740 Simmondsia chinensis HOM05D000174 ORTHO05D000630 1.4e-08 64.3 84 45.2
Prupe.8G142400 Prunus persica HOM05D000174 ORTHO05D000630 1.9e-08 63.9 225 28.4
BcaC01g02874 Brassica carinata HOM05D000174 ORTHO05D000630 2.4e-08 63.5 211 28.0
C09p10890 Brassica napus HOM05D000174 ORTHO05D000630 2.4e-08 63.5 192 28.1
BolC3t18214H Brassica oleracea HOM05D000174 ORTHO05D000630 2.4e-08 63.5 211 28.0
Lsat_1_v5_gn_7_85360 Lactuca sativa HOM05D000174 ORTHO05D000630 2.4e-08 63.5 213 29.1
Phvul.009G070800 Phaseolus vulgaris HOM05D000174 ORTHO05D000630 2.4e-08 63.5 199 30.7
AT5G67450 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 3.2e-08 63.2 215 27.0
BraA02t09342Z Brassica rapa HOM05D000174 ORTHO05D000630 3.2e-08 63.2 212 28.3
CSS0021023 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 3.2e-08 63.2 225 28.4
Duzib052G1103 Durio zibethinus HOM05D000174 ORTHO05D000630 3.2e-08 63.2 239 28.5
Hma1.2p1_0819F.1_g223800 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 3.2e-08 63.2 244 34.8
MD08G1086500 Malus domestica HOM05D000174 ORTHO05D000630 3.2e-08 63.2 120 39.2
HanXRQChr10g0281541 Helianthus annuus HOM05D000174 ORTHO05D000630 4.1e-08 62.8 232 35.3
HanXRQChr16g0509251 Helianthus annuus HOM05D000174 ORTHO05D000630 4.1e-08 62.8 194 28.9
VMungo1309G1035 Vigna mungo HOM05D000174 ORTHO05D000630 4.1e-08 62.8 208 31.7
BcaC04g23229 Brassica carinata HOM05D000174 ORTHO05D000630 5.4e-08 62.4 192 28.1
A02p44190 Brassica napus HOM05D000174 ORTHO05D000630 5.4e-08 62.4 212 28.3
BolC9t53982H Brassica oleracea HOM05D000174 ORTHO05D000630 5.4e-08 62.4 192 28.1
CsaV3_2G026210 Cucumis sativus L. HOM05D000174 ORTHO05D000630 5.4e-08 62.4 217 29.5
Lsat_1_v5_gn_4_130320 Lactuca sativa HOM05D000174 ORTHO05D000630 5.4e-08 62.4 220 27.7
BcaB04g20049 Brassica carinata HOM05D000174 ORTHO05D000630 7.1e-08 62.0 197 26.9
CiPaw.06G166400 Carya illinoinensis HOM05D000174 ORTHO05D000630 7.1e-08 62.0 253 28.1
Ca_13230_v3 Cicer arietinum L. HOM05D000174 ORTHO05D000630 7.1e-08 62.0 195 29.2
Hma1.2p1_1174F.1_g263760 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 7.1e-08 62.0 172 30.8
Hma1.2p1_3101F.1_g332705 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 7.1e-08 62.0 172 30.8
QL11p031245 Quercus lobata HOM05D000174 ORTHO05D000630 7.1e-08 62.0 224 27.7
MSTRG.24369 Avicennia marina HOM05D000174 ORTHO05D000630 9.2e-08 61.6 230 29.6
Gohir.D12G020300 Gossypium hirsutum HOM05D000174 ORTHO05D000630 9.2e-08 61.6 89 41.6
Lsat_1_v5_gn_9_111840 Lactuca sativa HOM05D000174 ORTHO05D000630 9.2e-08 61.6 211 27.5
MD10G1104100 Malus domestica HOM05D000174 ORTHO05D000630 9.2e-08 61.6 170 28.2
Nitab4.5_0001105g0110 Nicotiana tabacum HOM05D000174 ORTHO05D000630 9.2e-08 61.6 93 38.7
Nitab4.5_0012806g0010 Nicotiana tabacum HOM05D000174 ORTHO05D000630 9.2e-08 61.6 92 40.2
MSTRG.25041 Avicennia marina HOM05D000174 ORTHO05D000630 1.2e-07 61.2 250 30.0
BcaC07g39457 Brassica carinata HOM05D000174 ORTHO05D000630 1.2e-07 61.2 75 44.0
C02p64470 Brassica napus HOM05D000174 ORTHO05D000630 1.2e-07 61.2 227 27.8
BolC2t12511H Brassica oleracea HOM05D000174 ORTHO05D000630 1.2e-07 61.2 227 27.8
FAN20G2747 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.2e-07 61.2 86 39.5
Gohir.A12G020100 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.2e-07 61.2 89 41.6
Gohir.D06G020700 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.2e-07 61.2 175 30.3
HanXRQChr03g0069921 Helianthus annuus HOM05D000174 ORTHO05D000630 1.2e-07 61.2 214 28.5
Lj5P218T69 Lonicera japonica HOM05D000174 ORTHO05D000630 1.2e-07 61.2 204 28.9
Lalb_Chr08g0245511 Lupinus albus HOM05D000174 ORTHO05D000630 1.2e-07 61.2 195 35.4
Potri.014G017300 Populus trichocarpa HOM05D000174 ORTHO05D000630 1.2e-07 61.2 225 28.0
PGR004G1695 Punica granatum HOM05D000174 ORTHO05D000630 1.2e-07 61.2 206 29.1
TPR.G3766 Trifolium pratense HOM05D000174 ORTHO05D000630 1.2e-07 61.2 198 35.9
CARHR159010 Cardamine hirsuta HOM05D000174 ORTHO05D000630 1.6e-07 60.8 201 29.9
CDE04G3623 Ceratophyllum demersum HOM05D000174 ORTHO05D000630 1.6e-07 60.8 95 42.1
Ciclev10029065m.g Citrus clementina HOM05D000174 ORTHO05D000630 1.6e-07 60.8 185 31.4
FvH4_2g04120 Fragaria vesca HOM05D000174 ORTHO05D000630 1.6e-07 60.8 80 42.5
FAN24G2008 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.6e-07 60.8 80 42.5
Gorai.010G025200 Gossypium raimondii HOM05D000174 ORTHO05D000630 1.6e-07 60.8 175 30.3
MD15G1071400 Malus domestica HOM05D000174 ORTHO05D000630 1.6e-07 60.8 113 35.4
Oeu021366.1 Olea europaea HOM05D000174 ORTHO05D000630 1.6e-07 60.8 227 27.8
Sed0025984 Sechium edule HOM05D000174 ORTHO05D000630 1.6e-07 60.8 210 34.3
TWI12G0123 Tripterygium wilfordii HOM05D000174 ORTHO05D000630 1.6e-07 60.8 105 39.0
vmacro22062 Vaccinium macrocarpon HOM05D000174 ORTHO05D000630 1.6e-07 60.8 244 30.3
Aa31LG1G16010 Aethionema arabicum HOM05D000174 ORTHO05D000630 2.1e-07 60.5 82 41.5
Ah.09g231860 Amaranthus hybridus HOM05D000174 ORTHO05D000630 2.1e-07 60.5 172 29.7
BcaC03g18372 Brassica carinata HOM05D000174 ORTHO05D000630 2.1e-07 60.5 227 27.8
DCAR_029119 Daucus carota HOM05D000174 ORTHO05D000630 2.1e-07 60.5 231 27.3
FAN15G0056 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.1e-07 60.5 80 40.0
Haze_10236 Corylus avellana HOM05D000174 ORTHO05D000630 2.7e-07 60.1 227 29.1
Glyma.06G045400 Glycine max HOM05D000174 ORTHO05D000630 2.7e-07 60.1 96 38.5
Potri.002G119300 Populus trichocarpa HOM05D000174 ORTHO05D000630 2.7e-07 60.1 260 27.3
Cfa013678 Carpinus fangiana HOM05D000174 ORTHO05D000630 3.5e-07 59.7 240 27.9
Dinv44967 Davidia involucrata HOM05D000174 ORTHO05D000630 3.5e-07 59.7 108 37.0
Thhalv10004839m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 3.5e-07 59.7 72 43.1
Gorai.008G020700 Gossypium raimondii HOM05D000174 ORTHO05D000630 3.5e-07 59.7 89 40.4
HanXRQChr02g0039141 Helianthus annuus HOM05D000174 ORTHO05D000630 3.5e-07 59.7 81 39.5
Manes.07G061700 Manihot esculenta HOM05D000174 ORTHO05D000630 3.5e-07 59.7 175 29.7
Nitab4.5_0000164g0180 Nicotiana tabacum HOM05D000174 ORTHO05D000630 3.5e-07 59.7 237 35.9
RcHm_v2.0_Chr6g0253491 Rosa chinensis HOM05D000174 ORTHO05D000630 3.5e-07 59.7 235 28.9
SGA_v2.0_scaffold14G07107 Striga asiatica HOM05D000174 ORTHO05D000630 3.5e-07 59.7 85 41.2
AL5G29960 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 4.6e-07 59.3 195 27.2
Manes.05G180900 Manihot esculenta HOM05D000174 ORTHO05D000630 4.6e-07 59.3 241 27.4
Duzib041G0581 Durio zibethinus HOM05D000174 ORTHO05D000630 6.0e-07 58.9 222 27.5
Gohir.D01G108400 Gossypium hirsutum HOM05D000174 ORTHO05D000630 6.0e-07 58.9 84 46.4
Gorai.002G132600 Gossypium raimondii HOM05D000174 ORTHO05D000630 6.0e-07 58.9 84 46.4
Sed0023792 Sechium edule HOM05D000174 ORTHO05D000630 6.0e-07 58.9 97 36.1
BcaB03g13971 Brassica carinata HOM05D000174 ORTHO05D000630 7.8e-07 58.5 191 28.3
Eucgr.G01247 Eucalyptus grandis HOM05D000174 ORTHO05D000630 7.8e-07 58.5 89 42.7
Thecc.02G115400 Theobroma cacao HOM05D000174 ORTHO05D000630 7.8e-07 58.5 223 30.5
unitig_0.g634 Utricularia gibba HOM05D000174 ORTHO05D000630 7.8e-07 58.5 101 40.6
Cpa.g.sc249.7 Carica papaya HOM05D000174 ORTHO05D000630 1.0e-06 58.2 223 28.7
COL.COLO4_32531 Corchorus olitorius HOM05D000174 ORTHO05D000630 1.0e-06 58.2 188 27.7
SGA_v2.0_scaffold152G36793 Striga asiatica HOM05D000174 ORTHO05D000630 1.0e-06 58.2 104 37.5
THA.LOC104820510 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.0e-06 58.2 236 34.7
TAR376G0798 Trochodendron aralioides HOM05D000174 ORTHO05D000630 1.0e-06 58.2 101 38.6
BcaC05g28445 Brassica carinata HOM05D000174 ORTHO05D000630 1.3e-06 57.8 219 27.9
A05p30030 Brassica napus HOM05D000174 ORTHO05D000630 1.3e-06 57.8 217 28.1
A09p09300 Brassica napus HOM05D000174 ORTHO05D000630 1.3e-06 57.8 192 26.0
C05p45300 Brassica napus HOM05D000174 ORTHO05D000630 1.3e-06 57.8 219 27.9
BolC5t33253H Brassica oleracea HOM05D000174 ORTHO05D000630 1.3e-06 57.8 219 27.9
BraA08t34559Z Brassica rapa HOM05D000174 ORTHO05D000630 1.3e-06 57.8 235 32.8
BraA09t36583Z Brassica rapa HOM05D000174 ORTHO05D000630 1.3e-06 57.8 192 26.6
Lj5g0001700 Lotus japonicus HOM05D000174 ORTHO05D000630 1.3e-06 57.8 243 26.7
Sabra14G0011100 Salix brachista HOM05D000174 ORTHO05D000630 1.3e-06 57.8 252 26.6
TWI12G0308 Tripterygium wilfordii HOM05D000174 ORTHO05D000630 1.3e-06 57.8 107 33.6
TWI56G1150 Tripterygium wilfordii HOM05D000174 ORTHO05D000630 1.3e-06 57.8 107 35.5
EL10Ac8g19384 Beta vulgaris HOM05D000174 ORTHO05D000630 1.7e-06 57.4 223 30.5
CANSAT25G0483 Cannabis sativa HOM05D000174 ORTHO05D000630 1.7e-06 57.4 84 42.9
AUR62042998 Chenopodium quinoa HOM05D000174 ORTHO05D000630 1.7e-06 57.4 192 32.3
Ca_15909_v3 Cicer arietinum L. HOM05D000174 ORTHO05D000630 1.7e-06 57.4 214 38.3
Duzib187G1168 Durio zibethinus HOM05D000174 ORTHO05D000630 1.7e-06 57.4 215 27.4
HanXRQChr09g0266611 Helianthus annuus HOM05D000174 ORTHO05D000630 1.7e-06 57.4 105 36.2
Nitab4.5_0000569g0020 Nicotiana tabacum HOM05D000174 ORTHO05D000630 1.7e-06 57.4 201 27.4
Oeu037275.1 Olea europaea HOM05D000174 ORTHO05D000630 1.7e-06 57.4 229 27.9
Oeu046749.1 Olea europaea HOM05D000174 ORTHO05D000630 1.7e-06 57.4 203 28.6
SGA_v2.0_scaffold28G11823 Striga asiatica HOM05D000174 ORTHO05D000630 1.7e-06 57.4 96 42.7
Manes.08G012900 Manihot esculenta HOM05D000174 ORTHO05D001106 2.3e-06 57.0 212 27.8
PGR031G0171 Punica granatum HOM05D000174 ORTHO05D000630 2.3e-06 57.0 191 29.8
THA.LOC104807072 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 2.3e-06 57.0 204 37.7
unitig_60.g25462 Utricularia gibba HOM05D000174 ORTHO05D000630 2.3e-06 57.0 76 42.1
CAN.G606.51 Capsicum annuum HOM05D000174 ORTHO05D000630 3.0e-06 56.6 100 36.0
Cc10_g05650 Coffea canephora HOM05D000174 ORTHO05D000630 3.0e-06 56.6 242 35.1
Glyma.04G044900 Glycine max HOM05D000174 ORTHO05D000630 3.0e-06 56.6 70 45.7
Gohir.A06G023600 Gossypium hirsutum HOM05D000174 ORTHO05D000630 3.0e-06 56.6 174 29.3
Lj5g0014042 Lotus japonicus HOM05D000174 ORTHO05D000630 3.0e-06 56.6 166 31.9
RhsimUnG0125000 Rhododendron simsii HOM05D000174 ORTHO05D000630 3.0e-06 56.6 89 39.3
Actinidia00380 Actinidia chinensis HOM05D000174 ORTHO05D000630 3.9e-06 56.2 151 31.1
Cpa.g.sc6.32 Carica papaya HOM05D000174 ORTHO05D000630 3.9e-06 56.2 175 27.4
Dinv15799 Davidia involucrata HOM05D000174 ORTHO05D000630 3.9e-06 56.2 214 27.6
ECA236G3102 Erigeron canadensis HOM05D000174 ORTHO05D000630 3.9e-06 56.2 206 30.6
PGR083G0574 Punica granatum HOM05D000174 ORTHO05D000630 3.9e-06 56.2 212 38.2
Sabra09G0069300 Salix brachista HOM05D000174 ORTHO05D000630 3.9e-06 56.2 81 40.7
Sp2g29200 Schrenkiella parvula HOM05D000174 ORTHO05D000630 3.9e-06 56.2 211 28.4
Sp4g08060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 3.9e-06 56.2 226 26.1
SGA_v2.0_scaffold277G46697 Striga asiatica HOM05D000174 ORTHO05D001106 3.9e-06 56.2 221 27.6
Thecc.01G071000 Theobroma cacao HOM05D000174 ORTHO05D000630 3.9e-06 56.2 232 29.3
CARHR027240 Cardamine hirsuta HOM05D000174 ORTHO05D000630 5.1e-06 55.8 198 33.8
ECA240G1403 Erigeron canadensis HOM05D000174 ORTHO05D000630 5.1e-06 55.8 203 29.6
Glyma.17G236200 Glycine max HOM05D000174 ORTHO05D000630 5.1e-06 55.8 247 26.7
Psat6g016400 Pisum sativum HOM05D000174 ORTHO05D000630 5.1e-06 55.8 202 40.1
Potri.001G295500 Populus trichocarpa HOM05D000174 ORTHO05D000630 5.1e-06 55.8 81 39.5
Sc14g0002870 Simmondsia chinensis HOM05D000174 ORTHO05D000630 5.1e-06 55.8 106 34.9
A08p26090 Brassica napus HOM05D001736 ORTHO05D002344 6.6e-06 55.5 81 38.3
C03p74520 Brassica napus HOM05D000174 ORTHO05D000630 6.6e-06 55.5 223 33.6
BolC3t19700H Brassica oleracea HOM05D000174 ORTHO05D000630 6.6e-06 55.5 223 33.6
Ah.14g085590 Amaranthus hybridus HOM05D000174 ORTHO05D000630 8.6e-06 55.1 96 38.5
BcaC05g26773 Brassica carinata HOM05D000174 ORTHO05D000630 8.6e-06 55.1 194 34.5
A09p38370 Brassica napus HOM05D000174 ORTHO05D000630 8.6e-06 55.1 225 25.8
CDE06G0482 Ceratophyllum demersum HOM05D000091 ORTHO05D001206 8.6e-06 55.1 95 37.9
Thhalv10010032m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 8.6e-06 55.1 191 38.7
Peaxi162Scf00016g00288 Petunia axillaris HOM05D000174 ORTHO05D000630 8.6e-06 55.1 230 27.0
RcHm_v2.0_Chr6g0309391 Rosa chinensis HOM05D000174 ORTHO05D000630 8.6e-06 55.1 265 26.0
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 8.6e-06 55.1 75 42.7


User provided reference genes

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