Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 3.4e-89 331.6 168 100.0
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 1.8e-77 292.7 164 89.6
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 6.5e-64 247.7 158 72.2
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 3.2e-63 245.4 167 74.9
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 7.9e-62 240.7 157 73.9
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 2.3e-61 239.2 154 74.7
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 5.1e-61 238.0 165 68.5
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 6.7e-61 237.7 162 73.5
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 8.7e-61 237.3 152 72.4
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 1.5e-60 236.5 152 75.7
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 2.5e-60 235.7 152 72.4
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 2.5e-60 235.7 168 69.0
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 4.3e-60 235.0 163 73.0
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 5.7e-60 234.6 156 75.0
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 7.4e-60 234.2 152 75.0
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 7.4e-60 234.2 156 75.0
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.6e-59 233.0 168 66.1
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.6e-59 233.0 165 66.7
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 2.8e-59 232.3 155 71.6
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.8e-59 232.3 152 74.3
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 3.7e-59 231.9 161 68.3
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.7e-59 231.9 168 66.7
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 4.8e-59 231.5 163 68.1
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 6.3e-59 231.1 162 67.3
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 8.2e-59 230.7 159 69.8
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.1e-58 230.3 157 68.8
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 1.1e-58 230.3 159 66.0
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 1.4e-58 229.9 168 67.9
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.4e-58 229.9 159 68.6
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 2.4e-58 229.2 159 66.7
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 3.1e-58 228.8 152 71.1
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 4.1e-58 228.4 163 69.9
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 4.1e-58 228.4 164 67.1
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 1.2e-57 226.9 165 65.5
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 1.2e-57 226.9 168 67.3
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 1.5e-57 226.5 168 66.1
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.5e-57 226.5 168 66.1
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 3.4e-57 225.3 153 68.6
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 4.5e-57 224.9 154 68.8
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 4.5e-57 224.9 159 66.7
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.5e-57 224.9 171 64.9
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.5e-57 224.9 171 64.9
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 5.9e-57 224.6 164 65.2
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 5.9e-57 224.6 171 63.2
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 5.9e-57 224.6 186 61.8
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 7.7e-57 224.2 156 67.9
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 7.7e-57 224.2 156 67.9
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 7.7e-57 224.2 158 68.4
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.3e-56 223.4 164 65.9
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 2.2e-56 222.6 156 66.7
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 3.8e-56 221.9 167 67.1
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 6.5e-56 221.1 161 65.8
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 6.5e-56 221.1 158 65.8
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 6.5e-56 221.1 152 68.4
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.1e-55 220.3 152 68.4
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.1e-55 220.3 152 67.1
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 1.4e-55 219.9 168 62.5
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 1.4e-55 219.9 152 69.1
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 1.4e-55 219.9 152 68.4
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.5e-55 219.2 159 65.4
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 2.5e-55 219.2 152 67.1
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.5e-55 219.2 152 67.1
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 3.2e-55 218.8 152 67.1
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 3.2e-55 218.8 166 64.5
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 3.2e-55 218.8 152 69.7
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 4.2e-55 218.4 151 69.5
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 5.5e-55 218.0 152 66.4
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 7.2e-55 217.6 168 63.7
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 9.4e-55 217.2 163 64.4
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 1.2e-54 216.9 152 68.4
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 1.6e-54 216.5 152 66.4
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 2.7e-54 215.7 152 66.4
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 3.6e-54 215.3 150 67.3
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 4.6e-54 214.9 152 65.8
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 6.1e-54 214.5 152 65.8
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 1.0e-53 213.8 148 68.2
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 1.8e-53 213.0 158 65.8
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.8e-53 213.0 164 62.8
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 2.3e-53 212.6 154 70.1
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 3.9e-53 211.8 152 65.1
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 5.1e-53 211.5 172 62.8
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 2.5e-52 209.1 206 54.4
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.7e-51 206.5 176 58.5
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 2.6e-49 199.1 151 63.6
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 7.7e-49 197.6 169 58.6
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.0e-48 197.2 133 70.7
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.0e-48 197.2 151 62.3
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 1.2e-46 190.3 238 45.4
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 6.7e-45 184.5 121 70.2
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 1.5e-44 183.3 112 74.1
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 2.0e-44 183.0 113 73.5
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 5.7e-44 181.4 112 73.2
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.8e-42 176.4 164 56.7
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.8e-42 176.4 117 70.1
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 6.7e-37 157.9 108 70.4
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 4.4e-36 155.2 110 67.3
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 2.2e-35 152.9 94 74.5
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.6e-33 146.7 152 53.9
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 1.3e-32 143.7 89 73.0
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.0e-24 117.5 159 42.8
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.1e-22 108.2 118 48.3
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.6e-16 88.2 98 45.9
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 7.5e-12 74.7 71 52.1
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.7e-11 72.4 81 53.1
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 1.4e-10 70.5 77 46.8
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 3.2e-10 69.3 53 60.4


User provided reference genes

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