Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 7.3e-71 270.4 131 100.0
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 2.3e-24 115.9 84 70.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.5e-18 94.7 84 56.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 5.1e-16 88.2 83 48.2
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 6.7e-16 87.8 84 47.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 6.7e-16 87.8 83 47.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 8.7e-16 87.4 83 48.2
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 1.1e-15 87.0 83 47.0
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-15 87.0 84 46.4
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 1.1e-15 87.0 94 44.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 1.1e-15 87.0 95 45.3
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.9e-15 86.3 84 45.2
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 1.9e-15 86.3 84 45.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.9e-15 86.3 95 47.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.5e-15 85.9 95 47.4
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 3.3e-15 85.5 85 43.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 3.3e-15 85.5 83 44.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 4.3e-15 85.1 84 46.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 5.7e-15 84.7 83 45.8
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 5.7e-15 84.7 84 45.2
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 9.6e-15 84.0 84 45.2
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 9.6e-15 84.0 84 41.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 1.3e-14 83.6 84 40.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 1.3e-14 83.6 95 37.9
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 1.3e-14 83.6 84 41.7
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 1.6e-14 83.2 84 44.0
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.6e-14 83.2 84 41.7
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 1.6e-14 83.2 83 44.6
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.6e-14 83.2 97 41.2
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 1.6e-14 83.2 83 45.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 2.8e-14 82.4 95 37.9
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.8e-14 82.4 84 41.7
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 2.8e-14 82.4 97 43.3
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 2.8e-14 82.4 82 42.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 2.8e-14 82.4 84 44.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 3.7e-14 82.0 84 47.6
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 3.7e-14 82.0 84 41.7
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 6.3e-14 81.3 82 45.1
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.3e-14 81.3 84 39.3
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 6.3e-14 81.3 84 41.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 6.3e-14 81.3 83 42.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 8.2e-14 80.9 84 42.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 8.2e-14 80.9 84 46.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 8.2e-14 80.9 83 43.4
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 8.2e-14 80.9 84 46.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 1.1e-13 80.5 83 42.2
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 1.1e-13 80.5 95 38.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.1e-13 80.5 95 38.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.4e-13 80.1 84 41.7
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 1.4e-13 80.1 84 46.4
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.4e-13 80.1 84 41.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 1.8e-13 79.7 84 40.5
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 2.4e-13 79.3 82 42.7
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.4e-13 79.3 84 41.7
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.1e-13 79.0 84 42.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 3.1e-13 79.0 83 41.0
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 3.1e-13 79.0 84 41.7
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 3.1e-13 79.0 84 42.9
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 4.1e-13 78.6 84 44.0
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 4.1e-13 78.6 95 37.9
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 4.1e-13 78.6 95 38.9
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 4.1e-13 78.6 84 42.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 4.1e-13 78.6 95 36.8
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 5.3e-13 78.2 84 41.7
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 5.3e-13 78.2 82 41.5
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 5.3e-13 78.2 66 51.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 5.3e-13 78.2 84 42.9
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 6.9e-13 77.8 96 43.8
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 9.0e-13 77.4 95 37.9
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.2e-12 77.0 84 41.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 1.5e-12 76.6 84 41.7
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 1.5e-12 76.6 84 44.0
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 2.0e-12 76.3 82 40.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 2.0e-12 76.3 84 41.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 2.0e-12 76.3 84 39.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.6e-12 75.9 82 41.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 2.6e-12 75.9 84 42.9
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 2.6e-12 75.9 84 45.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 2.6e-12 75.9 84 42.9
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 2.6e-12 75.9 84 41.7
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 3.4e-12 75.5 84 41.7
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 3.4e-12 75.5 84 41.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 3.4e-12 75.5 84 41.7
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 3.4e-12 75.5 84 42.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 41.7
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 42.9
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 44.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 41.7
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 41.7
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 4.5e-12 75.1 84 40.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 5.9e-12 74.7 84 39.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 7.6e-12 74.3 84 40.5
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 7.6e-12 74.3 97 38.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 1.0e-11 73.9 84 39.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 1.3e-11 73.6 84 39.3
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.3e-11 73.6 84 41.7
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.7e-11 73.2 84 38.1
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.7e-11 73.2 84 38.1
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 1.7e-11 73.2 82 39.0
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 1.7e-11 73.2 84 40.5
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 2.9e-11 72.4 89 40.4
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 6.5e-11 71.2 84 40.5
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 6.5e-11 71.2 66 47.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 8.4e-11 70.9 82 37.8
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-10 70.5 66 45.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 2.1e-09 66.2 94 40.4
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 2.1e-09 66.2 94 40.4
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.1e-09 66.2 84 33.3
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 2.1e-09 66.2 82 36.6
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.6e-09 65.1 84 41.7
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 7.9e-09 64.3 84 41.7
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 1.3e-08 63.5 95 35.8
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 3.0e-08 62.4 84 42.9
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.9e-08 62.0 84 38.1
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.9e-07 59.7 54 50.0
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.3e-07 58.9 89 34.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.6e-06 56.6 86 32.6
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.8e-06 55.1 84 34.5


User provided reference genes

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