Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb156170 Zea mays HOM05D002996 ORTHO05D025899 1.4e-62 242.7 116 100.0
Zm00001eb156180 Zea mays HOM05D002996 ORTHO05D004756 4.5e-56 221.1 116 94.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 8.5e-15 84.0 39 100.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 8.5e-15 84.0 39 100.0
Zm00001eb125510 Zea mays HOM05D002996 ORTHO05D003536 5.5e-14 81.3 39 94.9
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 2.6e-11 72.4 39 87.2
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 4.4e-11 71.6 107 45.8
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 5.7e-11 71.2 39 87.2
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 5.7e-11 71.2 39 87.2
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 7.5e-11 70.9 39 87.2
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 7.5e-11 70.9 39 87.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 7.5e-11 70.9 39 84.6
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 9.8e-11 70.5 39 87.2
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 9.8e-11 70.5 39 87.2
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 1.3e-10 70.1 39 84.6
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 1.3e-10 70.1 39 84.6
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.3e-10 70.1 39 84.6
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.3e-10 70.1 39 87.2
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.3e-10 70.1 39 84.6
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 82.1
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 82.1
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 2.2e-10 69.3 39 84.6
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 82.1
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 84.6
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 84.6
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 84.6
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 82.1
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 2.8e-10 68.9 39 82.1
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 3.7e-10 68.6 39 84.6
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.7e-10 68.6 39 82.1
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 3.7e-10 68.6 39 84.6
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 4.8e-10 68.2 39 82.1
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 4.8e-10 68.2 39 82.1
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 4.8e-10 68.2 39 82.1
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 84.6
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 6.3e-10 67.8 39 82.1
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 8.3e-10 67.4 39 82.1
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 8.3e-10 67.4 39 84.6
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 8.3e-10 67.4 39 84.6
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 8.3e-10 67.4 39 79.5
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 8.3e-10 67.4 39 82.1
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 8.3e-10 67.4 39 82.1
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.1e-09 67.0 39 82.1
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 79.5
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 79.5
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 84.6
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 79.5
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 79.5
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 1.4e-09 66.6 39 82.1
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 82.1
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 82.1
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 79.5
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 76.9
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 82.1
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.8e-09 66.2 39 82.1
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 2.4e-09 65.9 39 79.5
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 3.1e-09 65.5 39 79.5
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 3.1e-09 65.5 39 76.9
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.1e-09 65.5 39 76.9
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.1e-09 65.5 39 79.5
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 4.1e-09 65.1 39 82.1
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 4.1e-09 65.1 34 94.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 76.9
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 5.4e-09 64.7 39 79.5
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 76.9
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 7.0e-09 64.3 39 79.5
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 9.1e-09 63.9 39 71.8
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 9.1e-09 63.9 39 79.5
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 9.1e-09 63.9 39 79.5
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 9.1e-09 63.9 39 76.9
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 9.1e-09 63.9 39 76.9
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.6e-08 63.2 39 76.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.6e-08 63.2 39 76.9
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.6e-08 63.2 39 76.9
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.6e-08 63.2 39 71.8
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 2.0e-08 62.8 39 76.9
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.0e-08 62.8 39 76.9
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.0e-08 62.8 39 76.9
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 2.0e-08 62.8 39 76.9
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 2.7e-08 62.4 39 74.4
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 2.7e-08 62.4 39 76.9
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 2.7e-08 62.4 39 74.4
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 2.7e-08 62.4 39 76.9
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 3.5e-08 62.0 39 74.4
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 3.5e-08 62.0 39 74.4
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 3.5e-08 62.0 39 74.4
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 5.9e-08 61.2 39 74.4
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 7.7e-08 60.8 39 74.4
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 7.7e-08 60.8 39 74.4
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 1.3e-07 60.1 36 77.8
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.7e-07 59.7 39 69.2
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 5.0e-07 58.2 39 69.2
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.5e-06 56.6 39 66.7
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.5e-06 56.6 39 66.7
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 7.2e-06 54.3 39 64.1
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 9.5e-06 53.9 39 59.0


User provided reference genes

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