Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 3.8e-247 857.8 463 100.0
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 6.4e-138 495.0 473 62.8
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 6.6e-42 176.0 465 34.4
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 6.2e-40 169.5 471 31.8
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 6.8e-39 166.0 445 32.4
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 8.9e-39 165.6 503 33.6
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 3.4e-38 163.7 466 32.0
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 5.8e-38 162.9 481 32.4
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 7.5e-38 162.5 458 30.8
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 7.5e-38 162.5 459 32.5
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 9.8e-38 162.2 444 32.2
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.9e-37 160.6 469 35.0
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 3.2e-36 157.1 462 29.7
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 5.4e-36 156.4 441 32.0
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 3.5e-35 153.7 462 31.6
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 7.8e-35 152.5 530 29.4
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 1.7e-34 151.4 508 31.9
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 5.1e-34 149.8 322 35.1
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 6.6e-34 149.4 441 31.7
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 8.6e-34 149.1 498 30.7
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 2.5e-33 147.5 435 30.3
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 3.3e-33 147.1 455 31.6
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 9.5e-33 145.6 483 31.3
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 1.2e-32 145.2 446 32.7
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 1.6e-32 144.8 461 30.2
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 1.6e-32 144.8 489 31.5
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 1.6e-32 144.8 471 31.2
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 2.1e-32 144.4 454 31.5
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 2.1e-32 144.4 460 32.6
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 2.8e-32 144.1 455 31.0
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 2.8e-32 144.1 485 30.9
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 6.2e-32 142.9 458 33.0
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 8.1e-32 142.5 482 29.7
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 1.1e-31 142.1 470 31.5
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 1.4e-31 141.7 385 30.6
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 4.0e-31 140.2 329 29.5
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 1.2e-30 138.7 432 31.0
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 2.0e-30 137.9 478 31.0
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 2.6e-30 137.5 429 31.2
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 5.8e-30 136.3 489 30.9
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 7.6e-30 136.0 481 31.6
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 9.9e-30 135.6 460 30.7
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 9.9e-30 135.6 467 30.8
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 1.3e-29 135.2 429 30.8
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 2.2e-29 134.4 485 29.7
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 2.2e-29 134.4 356 30.3
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 3.8e-29 133.7 466 31.3
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 3.8e-29 133.7 451 30.6
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 3.8e-29 133.7 473 29.8
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 4.9e-29 133.3 480 29.8
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 1.4e-28 131.7 479 32.4
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 1.9e-28 131.3 465 30.8
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 3.2e-28 130.6 469 30.5
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 3.2e-28 130.6 343 31.2
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 9.2e-28 129.0 468 31.4
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 1.2e-27 128.6 507 28.6
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 2.1e-27 127.9 443 28.4
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 4.6e-27 126.7 466 31.3
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 4.6e-27 126.7 456 30.3
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 2.3e-26 124.4 494 27.9
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 5.1e-26 123.2 437 31.4
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 5.6e-25 119.8 575 27.7
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 9.6e-25 119.0 418 28.5
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 2.1e-24 117.9 362 32.0
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 2.8e-24 117.5 465 30.3
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 3.6e-24 117.1 478 30.1
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 6.2e-24 116.3 463 30.5
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 1.8e-23 114.8 438 32.0
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 2.4e-23 114.4 515 27.0
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 5.2e-23 113.2 435 29.2
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 6.9e-23 112.8 325 32.3
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 2.6e-22 110.9 462 29.9
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 9.9e-22 109.0 397 30.7
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 1.3e-21 108.6 310 32.3
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.7e-21 108.2 368 31.0
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 1.7e-21 108.2 471 28.9
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 9.3e-20 102.4 155 40.6
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 1.6e-19 101.7 266 34.2
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 7.8e-19 99.4 295 29.8
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 2.3e-18 97.8 385 30.1
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 5.1e-18 96.7 207 34.3
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 9.6e-17 92.4 601 25.8
SMO145G0090 Selaginella moellendorffii HOM05D007356 ORTHO05D009247 9.6e-17 92.4 419 25.3
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 4.8e-16 90.1 431 26.7
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 1.1e-15 89.0 176 36.9
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 9.0e-15 85.9 148 38.5
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 2.0e-14 84.7 345 28.7
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 4.5e-14 83.6 446 26.0
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 1.7e-13 81.6 176 36.9
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 7.1e-12 76.3 188 35.1
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 1.0e-10 72.4 225 31.6
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 5.1e-10 70.1 89 37.1
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 8.7e-10 69.3 168 36.3
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 4.0e-07 60.5 282 27.0
Mapoly0080s0048 Marchantia polymorpha HOM05D007356 ORTHO05D009247 4.5e-06 57.0 220 27.7
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 9.9e-06 55.8 180 26.1


User provided reference genes

Program Settings