Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb154390 Zea mays HOM05D003009 ORTHO05D001701 3.9e-123 444.9 239 100.0
Os01g0726100 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 1.9e-56 223.4 140 70.7
Os05g0531200 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 1.9e-37 160.2 137 52.6
Zm00001eb293210 Zea mays HOM05D003009 ORTHO05D001701 9.6e-37 157.9 174 47.7
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 7.9e-15 85.1 95 47.4
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 8.7e-14 81.6 140 35.7
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 3.3e-13 79.7 91 45.1
Zm00001eb361780 Zea mays HOM05D003009 ORTHO05D001701 7.4e-13 78.6 137 37.2
MSTRG.7337 Avicennia marina HOM05D003009 ORTHO05D001701 9.7e-13 78.2 89 43.8
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 9.7e-13 78.2 96 40.6
Oeu064785.1 Olea europaea HOM05D003009 ORTHO05D001701 9.7e-13 78.2 135 36.3
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 1.3e-12 77.8 90 44.4
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 1.3e-12 77.8 91 44.0
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.3e-12 77.8 98 37.8
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 1.3e-12 77.8 143 37.8
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 1.6e-12 77.4 113 41.6
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.6e-12 77.4 97 42.3
Os05g0531400 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 1.6e-12 77.4 127 34.6
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 2.2e-12 77.0 91 45.1
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 2.8e-12 76.6 90 44.4
Nitab4.5_0001652g0100 Nicotiana tabacum HOM05D003009 ORTHO05D001701 2.8e-12 76.6 108 40.7
AL1G41840 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 3.7e-12 76.3 84 44.0
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 3.7e-12 76.3 90 42.2
Os01g0725900 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 3.7e-12 76.3 128 35.9
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 4.8e-12 75.9 84 44.0
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 4.8e-12 75.9 95 41.1
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 4.8e-12 75.9 90 43.3
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 6.3e-12 75.5 92 45.7
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 6.3e-12 75.5 110 39.1
vmacro03876 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 6.3e-12 75.5 117 40.2
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 8.2e-12 75.1 89 46.1
PGSC0003DMG400029700 Solanum tuberosum HOM05D003009 ORTHO05D001701 8.2e-12 75.1 123 35.8
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 1.1e-11 74.7 121 39.7
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.4e-11 74.3 94 41.5
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 1.4e-11 74.3 94 41.5
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 1.4e-11 74.3 112 38.4
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 1.8e-11 73.9 92 42.4
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 1.8e-11 73.9 99 40.4
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 1.8e-11 73.9 91 42.9
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 1.8e-11 73.9 98 40.8
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 2.4e-11 73.6 92 43.5
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 2.4e-11 73.6 89 44.9
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 2.4e-11 73.6 89 43.8
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 3.1e-11 73.2 84 42.9
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 3.1e-11 73.2 86 43.0
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.1e-11 73.2 92 43.5
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 3.1e-11 73.2 92 42.4
PSO675G7840 Papaver somniferum HOM05D003009 ORTHO05D001701 3.1e-11 73.2 149 38.9
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 4.1e-11 72.8 89 44.9
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 4.1e-11 72.8 95 40.0
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 6.9e-11 72.0 89 39.3
Cc02_g13480 Coffea canephora HOM05D003009 ORTHO05D001701 9.0e-11 71.6 86 47.7
DCAR_008035 Daucus carota HOM05D003009 ORTHO05D001701 9.0e-11 71.6 124 34.7
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 9.0e-11 71.6 85 43.5
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 9.0e-11 71.6 85 41.2
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 9.0e-11 71.6 90 41.1
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 9.0e-11 71.6 88 40.9
Solyc02g078040.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 9.0e-11 71.6 98 37.8
Sopen02g022880 Solanum pennellii HOM05D003009 ORTHO05D001701 9.0e-11 71.6 98 37.8
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 1.2e-10 71.2 96 40.6
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 1.2e-10 71.2 96 40.6
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 1.2e-10 71.2 96 40.6
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 1.2e-10 71.2 88 40.9
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 1.2e-10 71.2 86 43.0
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 1.2e-10 71.2 107 40.2
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 2.0e-10 70.5 96 37.5
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 2.0e-10 70.5 115 39.1
Zm00001eb293200 Zea mays HOM05D003009 ORTHO05D001701 2.0e-10 70.5 119 34.5
ATR0737G038 Amborella trichopoda HOM05D003009 ORTHO05D001701 2.6e-10 70.1 85 43.5
CAN.G529.10 Capsicum annuum HOM05D003009 ORTHO05D001701 2.6e-10 70.1 85 41.2
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.6e-10 70.1 101 38.6
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 2.6e-10 70.1 88 40.9
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 2.6e-10 70.1 90 43.3
Sopen02g022930 Solanum pennellii HOM05D003009 ORTHO05D001701 2.6e-10 70.1 129 35.7
unitig_22.g6231 Utricularia gibba HOM05D003009 ORTHO05D001701 2.6e-10 70.1 101 40.6
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.4e-10 69.7 101 38.6
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 4.5e-10 69.3 84 41.7
Sed0027489 Sechium edule HOM05D003009 ORTHO05D001701 4.5e-10 69.3 97 42.3
Solyc02g078100.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 4.5e-10 69.3 125 34.4
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 4.5e-10 69.3 85 36.5
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 5.9e-10 68.9 93 38.7
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.9e-10 68.9 95 38.9
Sabra11G0037400 Salix brachista HOM05D003009 ORTHO05D001701 5.9e-10 68.9 96 39.6
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 7.7e-10 68.6 130 33.1
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 7.7e-10 68.6 84 42.9
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 7.7e-10 68.6 93 41.9
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 7.7e-10 68.6 88 39.8
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 1.0e-09 68.2 93 39.8
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 1.0e-09 68.2 93 39.8
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 1.0e-09 68.2 85 40.0
PGSC0003DMG400029695 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.0e-09 68.2 84 41.7
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 1.0e-09 68.2 85 42.4
BcaC02g11549 Brassica carinata HOM05D003009 ORTHO05D001701 1.7e-09 67.4 122 36.1
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 1.7e-09 67.4 115 34.8
PSO724G1154 Papaver somniferum HOM05D003009 ORTHO05D001701 2.2e-09 67.0 122 41.0
C04p14040 Brassica napus HOM05D003009 ORTHO05D001701 3.8e-09 66.2 122 35.2
BolC4t22995H Brassica oleracea HOM05D003009 ORTHO05D001701 3.8e-09 66.2 122 35.2
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 3.8e-09 66.2 142 33.8
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 3.8e-09 66.2 93 39.8
Sc05g0007600 Simmondsia chinensis HOM05D003009 ORTHO05D001701 3.8e-09 66.2 82 41.5
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 5.0e-09 65.9 85 41.2
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 6.5e-09 65.5 84 39.3
A07p11350 Brassica napus HOM05D003009 ORTHO05D001701 6.5e-09 65.5 84 39.3
BraA07t28924Z Brassica rapa HOM05D003009 ORTHO05D001701 6.5e-09 65.5 84 39.3
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 6.5e-09 65.5 85 41.2
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 6.5e-09 65.5 86 37.2
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 6.5e-09 65.5 84 39.3
Aa31sc225G30 Aethionema arabicum HOM05D003009 ORTHO05D001701 8.5e-09 65.1 85 41.2
Aqoxy1G02393 Aquilegia oxysepala HOM05D003009 ORTHO05D001701 8.5e-09 65.1 134 32.8
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 8.5e-09 65.1 106 36.8
C07p17130 Brassica napus HOM05D003009 ORTHO05D001701 8.5e-09 65.1 84 38.1
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 8.5e-09 65.1 106 36.8
DCAR_004069 Daucus carota HOM05D003009 ORTHO05D001701 8.5e-09 65.1 147 32.0
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 8.5e-09 65.1 85 41.2
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 8.5e-09 65.1 103 36.9
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 8.5e-09 65.1 99 37.4
BcaC06g35349 Brassica carinata HOM05D003009 ORTHO05D001701 1.1e-08 64.7 84 38.1
BolC7t42219H Brassica oleracea HOM05D003009 ORTHO05D001701 1.1e-08 64.7 84 38.1
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 1.1e-08 64.7 108 33.3
PSO135G0310 Papaver somniferum HOM05D003009 ORTHO05D001701 1.1e-08 64.7 133 37.6
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.4e-08 64.3 73 42.5
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 1.4e-08 64.3 114 34.2
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 1.4e-08 64.3 105 36.2
Lalb_Chr20g0121811 Lupinus albus HOM05D003009 ORTHO05D001701 1.4e-08 64.3 100 41.0
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.4e-08 64.3 92 40.2
Peaxi162Scf00250g00058 Petunia axillaris HOM05D003009 ORTHO05D001701 1.4e-08 64.3 94 41.5
Peaxi162Scf74053g00003 Petunia axillaris HOM05D003009 ORTHO05D001701 1.4e-08 64.3 94 41.5
THA.LOC104814217 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 1.4e-08 64.3 86 36.0
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 1.9e-08 63.9 84 36.9
PGSC0003DMG400029699 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.9e-08 63.9 109 37.6
Eucgr.E03269 Eucalyptus grandis HOM05D003009 ORTHO05D001701 2.5e-08 63.5 97 37.1
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 3.2e-08 63.2 120 34.2
BraA09t39290Z Brassica rapa HOM05D003009 ORTHO05D001701 5.5e-08 62.4 84 34.5
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 5.5e-08 62.4 164 34.1
TAR627G0353 Trochodendron aralioides HOM05D003009 ORTHO05D001701 5.5e-08 62.4 95 38.9
EL10Ac8g20392 Beta vulgaris HOM05D003009 ORTHO05D001701 7.2e-08 62.0 84 35.7
A09p37790 Brassica napus HOM05D003009 ORTHO05D001701 7.2e-08 62.0 84 34.5
Nitab4.5_0011894g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 7.2e-08 62.0 106 37.7
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 9.4e-08 61.6 161 31.7
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 1.2e-07 61.2 84 36.9
Hund21219 Selenicereus undatus HOM05D003009 ORTHO05D001701 1.2e-07 61.2 94 34.0
TWI38G2351 Tripterygium wilfordii HOM05D003009 ORTHO05D001701 1.2e-07 61.2 82 37.8
Ah.14g089490 Amaranthus hybridus HOM05D003009 ORTHO05D001701 1.6e-07 60.8 78 38.5
C05p27140 Brassica napus HOM05D003009 ORTHO05D001701 1.6e-07 60.8 84 35.7
CARHR128860 Cardamine hirsuta HOM05D003009 ORTHO05D001701 1.6e-07 60.8 79 43.0
PSO339G4116 Papaver somniferum HOM05D003009 ORTHO05D001701 1.6e-07 60.8 144 37.5
PSO349G0113 Papaver somniferum HOM05D003009 ORTHO05D001701 1.6e-07 60.8 151 33.1
Peaxi162Scf00250g00053 Petunia axillaris HOM05D003009 ORTHO05D001701 1.6e-07 60.8 116 35.3
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 1.6e-07 60.8 94 39.4
BcaC05g26833 Brassica carinata HOM05D003009 ORTHO05D001701 2.1e-07 60.5 84 34.5
BolC5t31428H Brassica oleracea HOM05D003009 ORTHO05D001701 2.1e-07 60.5 84 34.5
Lalb_Chr16g0383841 Lupinus albus HOM05D003009 ORTHO05D001701 2.1e-07 60.5 117 34.2
CARHR127890 Cardamine hirsuta HOM05D003009 ORTHO05D001701 2.7e-07 60.1 91 36.3
BcaB07g32438 Brassica carinata HOM05D003009 ORTHO05D001701 4.6e-07 59.3 84 34.5
VMungo0251G3565 Vigna mungo HOM05D003009 ORTHO05D001701 4.6e-07 59.3 84 38.1
AUR62017024 Chenopodium quinoa HOM05D003009 ORTHO05D001701 6.1e-07 58.9 87 37.9
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 7.9e-07 58.5 137 30.7
AL4G29510 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 7.9e-07 58.5 84 36.9
Zm00001eb154410 Zea mays HOM05D003009 ORTHO05D001701 7.9e-07 58.5 148 35.1
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 1.0e-06 58.2 88 35.2
Glyma.13G178700 Glycine max HOM05D003009 ORTHO05D001701 1.4e-06 57.8 82 37.8
Prupe.7G084000 Prunus persica HOM05D003009 ORTHO05D001701 1.8e-06 57.4 57 47.4
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 2.3e-06 57.0 82 39.0
Ca_18551_v3 Cicer arietinum L. HOM05D003009 ORTHO05D001701 3.0e-06 56.6 84 36.9
Haze_06431 Corylus avellana HOM05D003009 ORTHO05D001701 3.0e-06 56.6 90 38.9
Ah.14g089500 Amaranthus hybridus HOM05D003009 ORTHO05D038262 5.1e-06 55.8 90 37.8
Medtr4g088735 Medicago truncatula HOM05D003009 ORTHO05D001701 6.7e-06 55.5 86 37.2
TPR.G23035 Trifolium pratense HOM05D003009 ORTHO05D001701 8.8e-06 55.1 103 35.0


User provided reference genes

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