Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.4e-207 726.1 373 100.0
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.2e-133 479.6 376 68.4
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-83 313.5 285 52.6
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 3.2e-79 299.7 285 51.2
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 3.3e-76 289.7 285 47.4
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.3e-76 289.7 288 50.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.3e-76 289.7 285 48.8
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 4.3e-76 289.3 288 48.6
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.3e-75 287.7 286 48.3
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.6e-75 287.3 285 50.2
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.8e-75 286.6 285 48.4
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.6e-75 286.2 287 48.8
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 6.2e-75 285.4 286 47.2
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 6.2e-75 285.4 288 49.0
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 6.2e-75 285.4 285 48.4
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 8.1e-75 285.0 288 49.3
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-74 284.6 287 49.5
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.1e-74 284.6 287 49.5
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.1e-74 284.6 335 43.3
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.1e-74 284.6 288 49.3
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.1e-74 284.6 288 49.3
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.4e-74 284.3 288 48.6
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.1e-74 283.1 285 47.4
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 5.3e-74 282.3 287 47.0
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 9.0e-74 281.6 286 46.5
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 9.0e-74 281.6 286 48.3
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.2e-73 281.2 288 48.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.6e-73 280.0 285 48.1
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 2.6e-73 280.0 287 48.4
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.4e-73 279.6 285 48.1
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.4e-73 279.6 335 44.5
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 7.6e-73 278.5 288 48.3
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 7.6e-73 278.5 288 48.3
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.6e-73 278.5 285 47.4
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 9.9e-73 278.1 287 48.8
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 9.9e-73 278.1 285 45.3
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.7e-72 277.3 287 47.4
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 2.9e-72 276.6 288 48.3
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.9e-72 276.6 287 46.7
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.8e-72 276.2 286 46.2
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 4.9e-72 275.8 286 45.5
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 6.4e-72 275.4 286 47.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 8.4e-72 275.0 288 47.6
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.1e-71 274.6 287 47.4
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.1e-71 274.6 287 47.0
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.9e-71 273.9 351 43.9
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 4.2e-71 272.7 286 46.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 5.4e-71 272.3 287 45.6
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 5.4e-71 272.3 285 46.0
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 5.4e-71 272.3 286 45.8
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 9.3e-71 271.6 287 44.9
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.2e-70 271.2 288 46.2
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.2e-70 271.2 272 50.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.1e-70 270.4 287 46.3
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.1e-70 270.4 285 46.7
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.1e-70 270.4 337 42.7
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 3.5e-70 269.6 285 44.2
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.6e-70 269.2 295 46.4
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.6e-70 269.2 274 47.4
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 4.6e-70 269.2 285 48.1
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 6.0e-70 268.9 339 44.8
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 6.0e-70 268.9 288 44.1
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.0e-69 268.1 266 49.2
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.0e-69 268.1 285 46.0
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.0e-69 268.1 285 46.7
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.0e-69 268.1 334 43.4
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.8e-69 267.3 345 42.3
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.3e-69 266.9 282 47.2
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.9e-69 266.2 302 44.4
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 5.1e-69 265.8 307 45.6
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 6.7e-69 265.4 286 47.2
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 6.7e-69 265.4 286 44.4
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-68 264.6 307 45.3
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.5e-68 264.2 285 45.6
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-68 264.2 337 43.3
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.9e-68 263.8 285 44.9
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.9e-68 263.8 286 45.8
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.5e-68 263.5 288 45.5
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 2.5e-68 263.5 266 48.5
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 3.3e-68 263.1 286 46.5
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 4.3e-68 262.7 288 44.8
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 5.6e-68 262.3 263 48.3
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 9.6e-68 261.5 285 45.6
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.1e-67 260.4 287 44.6
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.1e-67 260.4 285 44.2
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.1e-67 260.4 285 45.3
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 2.8e-67 260.0 254 49.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 3.7e-67 259.6 259 48.6
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.8e-67 259.2 333 42.3
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 4.8e-67 259.2 285 44.2
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 6.2e-67 258.8 289 44.3
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 6.2e-67 258.8 285 44.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-66 258.1 288 45.8
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.8e-66 257.3 294 45.2
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 2.4e-66 256.9 285 44.6
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 5.3e-66 255.8 285 45.3
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.2e-65 254.6 288 44.4
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.5e-65 254.2 289 43.9
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.6e-62 244.2 320 40.6
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.7e-62 243.4 286 43.4
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 3.5e-62 243.0 291 45.4
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 3.0e-61 240.0 273 45.1
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 2.5e-60 236.9 285 42.8
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 4.3e-60 236.1 331 40.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 7.4e-60 235.3 250 47.2
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.0e-56 224.9 292 40.4
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.0e-54 215.7 281 42.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 9.7e-52 208.4 285 39.6
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.1e-50 204.9 220 44.5
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.1e-50 203.4 222 46.8
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 6.9e-50 202.2 294 36.4
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.5e-47 193.7 188 50.0
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.1e-46 190.7 286 37.4
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-44 184.1 324 33.6
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 289 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-39 166.4 298 32.9
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-38 162.9 341 35.2
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.4e-37 161.4 299 31.4
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-36 157.5 306 33.3
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.3e-35 154.8 288 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-35 154.5 292 33.9
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.2e-35 152.1 318 31.4
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 9.1e-34 148.7 276 31.9
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-33 147.9 312 34.0
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-32 145.2 306 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-32 142.5 293 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-32 142.5 336 29.2
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.2e-31 140.2 282 29.8
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-30 137.1 308 30.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.7e-30 137.1 156 44.9
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.7e-30 136.3 330 31.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-28 130.6 236 33.5
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-27 127.1 296 29.1
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-27 126.7 263 32.7
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-26 122.9 296 28.4
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-25 120.6 296 28.4
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-24 118.2 272 29.0
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 6.7e-21 105.9 284 29.9
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.3e-11 75.1 161 31.1
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.4e-10 70.9 79 41.8
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-10 70.5 106 38.7
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.7e-09 67.4 87 40.2


User provided reference genes

Program Settings