Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 1.2e-177 626.7 378 100.0
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 2.0e-113 413.3 426 67.4
Os01g0757600 Oryza sativa ssp. japonica HOM05D004052 ORTHO05D004694 7.2e-71 271.9 258 69.0
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.6e-38 164.5 410 38.5
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.2e-35 154.1 413 37.0
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 8.6e-32 142.1 417 36.5
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 5.6e-31 139.4 400 35.2
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 9.5e-31 138.7 408 34.8
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.6e-30 137.9 411 35.0
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 2.1e-30 137.5 416 34.4
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 8.1e-30 135.6 416 34.4
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.1e-29 135.2 416 34.1
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 1.8e-29 134.4 416 34.9
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 3.1e-29 133.7 415 34.0
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 5.2e-29 132.9 416 36.8
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 1.2e-28 131.7 410 38.5
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 2.0e-28 131.0 419 33.2
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 2.0e-28 131.0 418 36.6
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.6e-28 130.6 413 33.7
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.6e-28 130.6 412 38.8
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 3.4e-28 130.2 410 34.1
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 3.4e-28 130.2 411 34.1
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.4e-28 129.8 400 35.2
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 7.5e-28 129.0 415 34.2
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 9.9e-28 128.6 403 34.0
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.7e-27 126.7 412 30.8
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 3.7e-27 126.7 414 35.3
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 2.4e-26 124.0 412 34.7
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 3.2e-26 123.6 407 36.9
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 4.1e-26 123.2 408 38.5
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 7.1e-26 122.5 413 36.6
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 7.1e-26 122.5 432 32.9
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 9.2e-26 122.1 416 39.2
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 6.0e-25 119.4 409 36.7
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 7.8e-25 119.0 410 34.4
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 1.3e-24 118.2 405 33.6
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 2.3e-24 117.5 415 36.4
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.3e-24 117.5 405 37.5
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 3.0e-24 117.1 418 39.2
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 8.6e-24 115.5 395 33.7
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 1.5e-23 114.8 419 39.4
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.5e-23 114.0 387 34.9
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 3.3e-23 113.6 404 35.4
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 5.6e-23 112.8 405 35.6
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 5.6e-23 112.8 340 34.7
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 7.3e-23 112.5 446 35.2
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.1e-22 110.9 380 34.5
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.8e-22 110.5 418 31.6
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.8e-22 110.5 418 31.6
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 6.2e-22 109.4 401 37.4
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 8.1e-22 109.0 418 32.3
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 8.1e-22 109.0 408 31.9
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 1.1e-21 108.6 414 35.5
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 1.1e-21 108.6 420 36.7
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.4e-21 108.2 409 33.0
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.4e-21 108.2 409 32.8
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 1.8e-21 107.8 419 37.7
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.4e-21 107.5 404 35.6
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 6.8e-21 105.9 416 34.6
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 8.9e-21 105.5 419 33.4
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 1.2e-20 105.1 418 39.2
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 2.0e-20 104.4 415 35.2
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 2.6e-20 104.0 398 34.4
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 4.4e-20 103.2 397 32.5
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 9.9e-20 102.1 414 39.4
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 1.3e-19 101.7 401 31.7
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 1.7e-19 101.3 398 37.9
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 2.2e-19 100.9 398 34.4
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 2.2e-19 100.9 398 34.4
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 2.9e-19 100.5 398 36.2
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 3.8e-19 100.1 404 37.9
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.9e-19 99.8 400 33.5
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 6.4e-19 99.4 415 41.4
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 8.4e-19 99.0 403 35.2
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.1e-18 98.6 409 32.0
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 1.1e-18 98.6 426 34.7
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 1.4e-18 98.2 410 30.7
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.9e-18 97.8 425 36.0
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.4e-18 97.4 401 31.9
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 3.2e-18 97.1 407 37.6
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 5.4e-18 96.3 418 34.2
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 5.4e-18 96.3 344 34.6
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 7.1e-18 95.9 417 37.2
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 9.2e-18 95.5 429 37.3
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 1.2e-17 95.1 403 37.5
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.7e-17 94.0 402 33.1
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 2.7e-17 94.0 431 31.3
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 3.5e-17 93.6 412 35.7
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 3.5e-17 93.6 407 29.5
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.8e-17 92.4 407 34.2
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 7.8e-17 92.4 407 34.4
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 7.8e-17 92.4 403 35.2
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.3e-16 90.9 411 36.0
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 2.3e-16 90.9 412 31.3
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 5.1e-16 89.7 413 38.0
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 5.1e-16 89.7 406 34.2
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 1.1e-15 88.6 417 32.1
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.9e-15 87.8 419 29.8
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 2.5e-15 87.4 407 32.7
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.5e-15 87.4 401 33.7
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 2.5e-15 87.4 409 32.8
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 4.3e-15 86.7 407 34.6
Os05g0514500 Oryza sativa ssp. japonica HOM05D043041 ORTHO05D049692 4.3e-15 86.7 376 30.6
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 5.6e-15 86.3 411 32.6
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 5.6e-15 86.3 415 28.7
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 7.3e-15 85.9 410 34.1
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 1.2e-14 85.1 433 36.7
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 1.6e-14 84.7 439 33.0
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 2.1e-14 84.3 402 26.6
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 4.7e-14 83.2 393 34.4
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.8e-13 81.3 410 32.7
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 3.1e-13 80.5 423 35.5
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 4.0e-13 80.1 401 28.7
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.0e-13 80.1 393 36.9
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 5.2e-13 79.7 405 34.1
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 5.2e-13 79.7 406 36.7
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 6.9e-13 79.3 419 34.6
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 6.9e-13 79.3 389 36.2
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 6.9e-13 79.3 394 32.0
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.2e-12 78.6 414 35.5
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.5e-12 78.2 394 27.7
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 3.4e-12 77.0 337 31.5
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 3.4e-12 77.0 398 37.2
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 4.4e-12 76.6 395 31.9
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 5.8e-12 76.3 395 30.9
Zm00001eb353120 Zea mays HOM05D043041 ORTHO05D049692 5.8e-12 76.3 340 32.1
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 7.6e-12 75.9 405 35.1
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 1.7e-11 74.7 389 29.3
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 8.4e-11 72.4 403 28.5
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.4e-10 71.6 395 38.5
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.9e-10 71.2 398 33.2
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 2.4e-10 70.9 406 35.2
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 1.2e-09 68.6 400 33.2
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.2e-09 68.6 97 45.4
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.6e-09 68.2 404 35.4
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 2.1e-09 67.8 419 31.0
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 2.1e-09 67.8 406 35.5
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 2.7e-09 67.4 88 47.7
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 4.6e-09 66.6 384 34.1
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 4.6e-09 66.6 384 34.1
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 1.7e-08 64.7 381 33.9
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 2.3e-08 64.3 409 31.5
Duzib168G0376 Durio zibethinus HOM05D000666 ORTHO05D001727 5.1e-08 63.2 111 43.2
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 8.7e-08 62.4 420 27.9
Nn2g10660 Nelumbo nucifera HOM05D000666 ORTHO05D001727 1.1e-07 62.0 112 46.4
Thecc.09G261500 Theobroma cacao HOM05D000666 ORTHO05D001727 1.1e-07 62.0 110 44.5
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 1.1e-07 62.0 190 39.5
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 2.5e-07 60.8 391 30.7
MBI14_g17614_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001727 3.3e-07 60.5 115 42.6
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 4.3e-07 60.1 97 50.5
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 4.3e-07 60.1 406 31.8
Lalb_Chr03g0027061 Lupinus albus HOM05D000666 ORTHO05D001727 7.3e-07 59.3 109 39.4
Dinv32802 Davidia involucrata HOM05D000666 ORTHO05D001727 1.3e-06 58.5 110 41.8
Lalb_Chr19g0137441 Lupinus albus HOM05D000666 ORTHO05D001727 1.3e-06 58.5 111 37.8
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 1.6e-06 58.2 396 32.3
CANSAT54G0448 Cannabis sativa HOM05D000666 ORTHO05D001727 1.6e-06 58.2 61 52.5
HPP92_024761 Vanilla planifolia HOM05D004052 ORTHO05D004694 1.6e-06 58.2 375 29.6
CDE09G1432 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.8e-06 57.4 96 43.8
TAR633G2804 Trochodendron aralioides HOM05D000666 ORTHO05D001727 3.6e-06 57.0 112 42.9
MBI14_g13893_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001727 4.8e-06 56.6 109 42.2
arahy.Tifrunner.gnm1.ann1.3WQI06 Arachis hypogaea HOM05D000666 ORTHO05D001727 6.2e-06 56.2 106 40.6
Glyma.15G044900 Glycine max HOM05D000666 ORTHO05D001727 8.1e-06 55.8 107 35.5
VMungo1080G0217 Vigna mungo HOM05D000666 ORTHO05D001727 8.1e-06 55.8 109 36.7


User provided reference genes

Program Settings