Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 9.0e-91 337.0 186 100.0
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 9.1e-51 204.1 189 65.6
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 1.6e-39 166.8 156 59.6
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 1.0e-38 164.1 153 59.5
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 1.4e-38 163.7 157 59.2
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 2.3e-38 162.9 177 52.5
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 2.3e-38 162.9 177 52.5
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 4.0e-38 162.2 162 56.2
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 4.0e-38 162.2 153 58.8
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 5.2e-38 161.8 163 55.2
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 6.7e-38 161.4 188 55.3
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 8.8e-38 161.0 188 55.3
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.2e-37 160.6 174 53.4
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 1.2e-37 160.6 187 54.5
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 1.5e-37 160.2 158 58.9
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 7.5e-37 157.9 177 50.3
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 1.3e-36 157.1 185 51.4
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 2.2e-36 156.4 189 50.8
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 2.2e-36 156.4 189 50.8
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 2.8e-36 156.0 156 54.5
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 4.8e-36 155.2 174 52.3
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 8.3e-36 154.5 185 53.5
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 1.1e-35 154.1 153 53.6
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 1.4e-35 153.7 185 51.4
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.4e-35 153.7 156 55.8
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 1.4e-35 153.7 157 55.4
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 1.8e-35 153.3 175 53.1
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.8e-35 153.3 154 54.5
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 1.8e-35 153.3 138 60.9
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 2.4e-35 152.9 156 55.1
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 2.4e-35 152.9 134 61.2
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 2.4e-35 152.9 188 50.5
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 3.1e-35 152.5 158 55.1
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 4.1e-35 152.1 184 51.1
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 5.3e-35 151.8 164 52.4
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 5.3e-35 151.8 161 55.9
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 7.0e-35 151.4 186 48.4
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 9.1e-35 151.0 172 52.9
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 1.6e-34 150.2 175 49.7
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 1.6e-34 150.2 140 60.0
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.6e-34 150.2 140 60.0
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.6e-34 150.2 140 60.0
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 1.6e-34 150.2 181 55.2
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 1.6e-34 150.2 168 51.2
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 3.5e-34 149.1 135 60.0
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 4.5e-34 148.7 143 61.5
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 5.9e-34 148.3 175 49.7
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.7e-33 146.7 153 55.6
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 2.2e-33 146.4 185 49.7
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.2e-33 146.4 139 62.6
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 2.9e-33 146.0 186 50.0
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 3.8e-33 145.6 178 49.4
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 6.5e-33 144.8 172 51.2
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 6.5e-33 144.8 137 62.0
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 1.1e-32 144.1 148 55.4
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 3.2e-32 142.5 169 52.7
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 4.2e-32 142.1 150 52.7
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 5.5e-32 141.7 195 47.2
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 9.4e-32 141.0 154 50.6
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 9.4e-32 141.0 185 49.7
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 1.2e-31 140.6 161 53.4
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 1.6e-31 140.2 166 51.8
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 2.1e-31 139.8 185 49.2
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 2.1e-31 139.8 180 46.7
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 2.1e-31 139.8 180 46.7
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 2.1e-31 139.8 171 46.8
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 2.7e-31 139.4 179 50.3
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 2.7e-31 139.4 179 50.3
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 3.6e-31 139.0 152 53.3
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 3.6e-31 139.0 171 47.4
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 3.6e-31 139.0 188 47.3
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 4.7e-31 138.7 180 50.0
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 4.7e-31 138.7 179 51.4
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 8.0e-31 137.9 184 47.3
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 1.4e-30 137.1 171 48.0
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 1.8e-30 136.7 155 49.7
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 1.8e-30 136.7 158 50.0
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.3e-30 136.3 185 45.9
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 4.0e-30 135.6 152 52.6
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 5.2e-30 135.2 184 46.7
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 6.8e-30 134.8 173 50.9
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 8.8e-30 134.4 181 45.9
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 8.8e-30 134.4 186 46.2
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 8.8e-30 134.4 158 50.0
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 2.0e-29 133.3 185 46.5
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 4.4e-29 132.1 185 48.1
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 7.5e-29 131.3 154 48.1
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 9.8e-29 131.0 134 51.5
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 9.8e-29 131.0 151 52.3
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 1.7e-28 130.2 153 52.3
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 2.8e-28 129.4 146 50.7
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 3.7e-28 129.0 184 45.1
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 2.4e-27 126.3 130 56.9
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 4.1e-27 125.6 151 52.3
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 5.4e-27 125.2 185 47.0
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 7.0e-27 124.8 154 47.4
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 7.0e-27 124.8 151 52.3
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 1.6e-26 123.6 167 47.9
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 2.0e-26 123.2 125 54.4
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 2.0e-26 123.2 167 47.3
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 2.0e-26 123.2 167 47.3
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 2.0e-26 123.2 130 57.7
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 4.5e-26 122.1 167 48.5
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 5.9e-26 121.7 128 55.5
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 1.0e-25 120.9 126 55.6
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 1.7e-25 120.2 167 46.7
SHI21255 Sapria himalayana HOM05D005886 ORTHO05D007512 4.1e-19 99.0 110 56.4
HanXRQChr07g0186821 Helianthus annuus HOM05D005886 ORTHO05D007512 1.0e-17 94.4 89 59.6
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 2.3e-17 93.2 85 54.1
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 3.6e-15 85.9 108 49.1
AUR62011207 Chenopodium quinoa HOM05D005886 ORTHO05D007512 3.6e-15 85.9 67 70.1
SEGI_05706 Sequoiadendron giganteum HOM05D005886 ORTHO05D007512 4.7e-15 85.5 132 41.7
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 6.8e-14 81.6 95 53.7
Psat6g052440 Pisum sativum HOM05D005886 ORTHO05D007512 9.8e-13 77.8 103 45.6
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 1.3e-12 77.4 68 54.4
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 6.4e-12 75.1 87 49.4
AUR62013280 Chenopodium quinoa HOM05D005886 ORTHO05D007512 1.6e-10 70.5 51 68.6
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 1.6e-10 70.5 58 56.9
CSS0009115 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 4.6e-10 68.9 61 55.7
GSVIVG01034602001 Vitis vinifera HOM05D005886 ORTHO05D007512 4.6e-10 68.9 66 56.1
Nn7g36032 Nelumbo nucifera HOM05D005886 ORTHO05D007512 2.8e-07 59.7 66 48.5


User provided reference genes

Program Settings