Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.1e-101 373.2 180 100.0
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.3e-82 308.5 167 89.2
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.6e-50 202.6 176 67.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 4.5e-39 165.2 95 76.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.5e-39 165.2 90 82.2
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.9e-39 164.9 92 79.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.5e-37 159.5 89 80.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.2e-37 158.7 95 73.7
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 5.5e-37 158.3 132 58.3
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.2e-37 157.9 90 77.8
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.2e-37 157.9 90 77.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 9.4e-37 157.5 91 76.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 9.4e-37 157.5 91 79.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 9.4e-37 157.5 90 77.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-36 157.1 90 77.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.6e-36 156.8 90 76.7
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.6e-36 156.8 93 75.3
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.6e-36 156.8 90 75.6
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.1e-36 156.4 90 75.6
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.1e-36 156.4 90 75.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.7e-36 156.0 90 78.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.7e-36 156.0 90 78.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.6e-36 155.6 89 78.7
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.6e-36 155.6 90 74.4
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.7e-36 155.2 104 69.2
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.1e-36 154.8 90 77.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.1e-36 154.8 90 77.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 8.0e-36 154.5 90 74.4
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.0e-36 154.5 90 76.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.0e-36 154.5 90 76.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.0e-36 154.5 90 76.7
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.0e-35 154.1 92 75.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.0e-35 154.1 94 70.2
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.0e-35 154.1 90 76.7
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.0e-35 154.1 90 76.7
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.4e-35 153.7 90 75.6
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.8e-35 153.3 88 78.4
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.3e-35 152.9 94 73.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.3e-35 152.9 90 75.6
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.0e-35 152.5 132 55.3
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.0e-35 152.5 95 71.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 4.0e-35 152.1 91 74.7
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 5.2e-35 151.8 90 73.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.2e-35 151.8 94 70.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 5.2e-35 151.8 94 70.2
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 6.8e-35 151.4 133 56.4
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 6.8e-35 151.4 90 74.4
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 6.8e-35 151.4 90 76.7
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.8e-35 151.0 93 74.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 8.8e-35 151.0 90 72.2
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-34 150.6 159 52.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-34 150.6 91 73.6
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.5e-34 150.2 102 70.6
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-34 150.2 93 72.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-34 150.2 93 72.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.0e-34 149.8 90 73.3
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 2.0e-34 149.8 90 75.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.0e-34 149.8 90 73.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.0e-34 149.8 91 74.7
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-34 149.8 89 76.4
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-34 149.4 90 75.6
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-34 149.4 90 75.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.6e-34 149.4 90 75.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-34 149.4 91 74.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-34 149.4 91 74.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.4e-34 149.1 91 73.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-34 149.1 159 52.8
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 3.4e-34 149.1 91 76.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.4e-34 149.1 99 69.7
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.4e-34 148.7 90 75.6
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 4.4e-34 148.7 88 77.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 5.7e-34 148.3 129 57.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 5.7e-34 148.3 89 73.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 5.7e-34 148.3 150 53.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 7.5e-34 147.9 90 76.7
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.5e-34 147.9 103 65.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 9.8e-34 147.5 104 66.3
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 9.8e-34 147.5 90 72.2
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.8e-34 147.5 95 67.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.3e-33 147.1 99 65.7
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-33 146.4 157 52.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.2e-33 146.4 168 48.2
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.2e-33 146.4 90 74.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.2e-33 146.4 102 66.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.2e-33 146.4 90 74.4
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.8e-33 146.0 91 72.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.7e-33 145.6 91 72.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.7e-33 145.6 102 66.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.7e-33 145.6 90 70.0
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 6.3e-33 144.8 91 73.6
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 6.3e-33 144.8 168 48.2
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.1e-32 144.1 92 68.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.1e-32 144.1 90 71.1
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.1e-32 144.1 91 71.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-32 143.7 89 69.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-32 143.7 90 72.2
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.4e-32 143.7 89 73.0
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.8e-32 143.3 137 51.8
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.8e-32 143.3 101 66.3
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 5.4e-32 141.7 92 67.4
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.0e-32 141.4 90 73.3
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 7.0e-32 141.4 166 48.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 9.1e-32 141.0 91 70.3
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 9.1e-32 141.0 91 70.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 9.1e-32 141.0 92 69.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.1e-32 141.0 90 73.3
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 9.1e-32 141.0 90 71.1
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 9.1e-32 141.0 90 72.2
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 9.1e-32 141.0 89 70.8
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-31 140.6 110 59.1
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-31 140.6 100 64.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.2e-31 140.6 100 64.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.2e-31 140.6 110 59.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.6e-31 140.2 151 49.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 2.7e-31 139.4 101 64.4
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.5e-31 139.0 90 68.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.5e-31 138.7 151 49.0
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 5.9e-31 138.3 135 54.1
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 5.9e-31 138.3 91 65.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.0e-30 137.5 90 70.0
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.7e-30 136.7 88 68.2
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-30 136.3 89 68.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.8e-30 135.6 92 65.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.8e-30 135.6 140 55.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.5e-30 134.8 89 66.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.5e-29 132.9 93 65.6
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.5e-29 132.9 130 53.8
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.8e-28 129.4 89 66.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.4e-27 127.1 93 64.5
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.8e-27 124.4 109 60.6
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.0e-26 123.2 94 60.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.3e-25 118.2 91 59.3
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 8.3e-25 117.9 93 61.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.4e-24 116.3 150 46.0
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.0e-24 114.8 92 54.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.7e-23 112.8 80 68.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.5e-23 112.5 151 43.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.5e-23 112.5 137 46.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.5e-23 112.1 88 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.9e-22 109.4 89 58.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-21 107.5 89 55.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-21 107.1 99 55.6
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.5e-21 106.3 75 66.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.3e-21 105.5 62 74.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.1e-20 103.2 65 69.2
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.0e-18 96.7 59 72.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-18 96.7 62 69.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.0e-18 96.7 60 71.7
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.4e-18 95.5 66 66.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-17 93.6 71 60.6
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 5.8e-10 68.6 62 48.4
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-09 64.7 124 33.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-08 62.4 38 73.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.2e-08 61.2 39 69.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-07 60.1 62 53.2
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 6.0e-07 58.5 41 51.2


User provided reference genes

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