Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb151390 Zea mays HOM05D007319 ORTHO05D008576 2.3e-60 235.3 115 100.0
Zm00001eb369790 Zea mays HOM05D007319 ORTHO05D008576 1.5e-16 89.7 71 69.0
Os01g0783400 Oryza sativa ssp. japonica HOM05D007319 ORTHO05D008576 1.4e-14 83.2 71 64.8
Lj3g0006033 Lotus japonicus HOM05D007319 ORTHO05D008576 8.2e-10 67.4 52 57.7
Lj3g0020364 Lotus japonicus HOM05D007319 ORTHO05D008576 8.2e-10 67.4 52 57.7
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 5.3e-09 64.7 52 57.7
MBI02_g03610_MAGBIO Magnolia biondii HOM05D007319 ORTHO05D008576 6.9e-09 64.3 52 57.7
TAR626G1179 Trochodendron aralioides HOM05D007319 ORTHO05D008576 1.2e-08 63.5 52 57.7
CANSAT64G1375 Cannabis sativa HOM05D007319 ORTHO05D008576 3.4e-08 62.0 52 51.9
Cpa.g.sc17.7 Carica papaya HOM05D007319 ORTHO05D008576 3.4e-08 62.0 52 57.7
CSS0021958 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 4.5e-08 61.6 57 52.6
CsaV3_7G004000 Cucumis sativus L. HOM05D007319 ORTHO05D008576 4.5e-08 61.6 52 53.8
Sed0019912 Sechium edule HOM05D007319 ORTHO05D008576 4.5e-08 61.6 52 51.9
CSS0043355 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 7.7e-08 60.8 52 53.8
CSS0048621 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 7.7e-08 60.8 52 53.8
CSS0049465 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 7.7e-08 60.8 52 53.8
SGA_v2.0_scaffold49G18317 Striga asiatica HOM05D007319 ORTHO05D008576 7.7e-08 60.8 52 57.7
ClCG02G001500 Citrullus lanatus HOM05D007319 ORTHO05D008576 1.0e-07 60.5 52 51.9
MELO3C018779.2 Cucumis melo HOM05D007319 ORTHO05D008576 1.0e-07 60.5 52 50.0
Dinv13851 Davidia involucrata HOM05D007319 ORTHO05D008576 1.0e-07 60.5 51 54.9
Nn1g06835 Nelumbo nucifera HOM05D003350 ORTHO05D008576 1.0e-07 60.5 52 51.9
TWI18G1078 Tripterygium wilfordii HOM05D007319 ORTHO05D008576 1.0e-07 60.5 52 50.0
ATR1132G134 Amborella trichopoda HOM05D003350 ORTHO05D008576 1.3e-07 60.1 53 50.9
Aqoxy3G01438 Aquilegia oxysepala HOM05D003350 ORTHO05D008576 1.3e-07 60.1 63 55.6
Medtr0280s0030 Medicago truncatula HOM05D007319 ORTHO05D008576 1.3e-07 60.1 55 58.2
arahy.Tifrunner.gnm1.ann1.74LKV9 Arachis hypogaea HOM05D007319 ORTHO05D008576 1.7e-07 59.7 52 51.9
arahy.Tifrunner.gnm1.ann1.RET3PJ Arachis hypogaea HOM05D007319 ORTHO05D008576 1.7e-07 59.7 52 51.9
Haze_13028 Corylus avellana HOM05D007319 ORTHO05D008576 1.7e-07 59.7 59 47.5
Hma1.2p1_1090F.1_g255770 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 1.7e-07 59.7 52 55.8
Hma1.2p1_3430F.1_g336010 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 1.7e-07 59.7 52 55.8
Sabra13G0120700 Salix brachista HOM05D007319 ORTHO05D008576 2.2e-07 59.3 57 49.1
Atru.chr6.3563 Acer truncatum HOM05D007319 ORTHO05D008576 3.8e-07 58.5 52 48.1
Rhsim04G0059100 Rhododendron simsii HOM05D007319 ORTHO05D008576 3.8e-07 58.5 52 50.0
RhsimUnG0197400 Rhododendron simsii HOM05D007319 ORTHO05D008576 3.8e-07 58.5 52 50.0
vmacro09306 Vaccinium macrocarpon HOM05D007319 ORTHO05D008576 3.8e-07 58.5 52 50.0
Cfa014494 Carpinus fangiana HOM05D007319 ORTHO05D008576 5.0e-07 58.2 52 48.1
Ca_08326_v3 Cicer arietinum L. HOM05D007319 ORTHO05D008576 5.0e-07 58.2 52 53.8
Sc23g0005010 Simmondsia chinensis HOM05D007319 ORTHO05D008576 5.0e-07 58.2 49 57.1
GSVIVG01000444001 Vitis vinifera HOM05D007319 ORTHO05D008576 5.0e-07 58.2 52 50.0
Gohir.A11G222102 Gossypium hirsutum HOM05D007319 ORTHO05D008576 6.5e-07 57.8 52 51.9
Gohir.D11G230600 Gossypium hirsutum HOM05D007319 ORTHO05D008576 6.5e-07 57.8 52 51.9
Gorai.003G066900 Gossypium raimondii HOM05D007319 ORTHO05D008576 6.5e-07 57.8 52 51.9
Psat7g202760 Pisum sativum HOM05D007319 ORTHO05D008576 6.5e-07 57.8 55 56.4
Potri.013G121700 Populus trichocarpa HOM05D007319 ORTHO05D008576 8.5e-07 57.4 52 48.1
CiPaw.04G121400 Carya illinoinensis HOM05D007319 ORTHO05D008576 1.1e-06 57.0 52 50.0
DCAR_021209 Daucus carota HOM05D007319 ORTHO05D008576 1.1e-06 57.0 52 57.7
MBI02_g10998_MAGBIO Magnolia biondii HOM05D003350 ORTHO05D008576 1.1e-06 57.0 52 53.8
PSO541G2656 Papaver somniferum HOM05D007319 ORTHO05D008576 1.1e-06 57.0 52 48.1
Atru.chr6.3094 Acer truncatum HOM05D007319 ORTHO05D008576 1.4e-06 56.6 52 44.2
Actinidia30494 Actinidia chinensis HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 48.1
CSS0000364 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 50.0
Duzib132G0482 Durio zibethinus HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 48.1
Phvul.011G109000 Phaseolus vulgaris HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 48.1
QL08p036137 Quercus lobata HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 48.1
Thecc.02G167300 Theobroma cacao HOM05D007319 ORTHO05D008576 1.9e-06 56.2 52 48.1
Lj1A744T30 Lonicera japonica HOM05D007319 ORTHO05D008576 2.5e-06 55.8 52 50.0
COL.COLO4_13062 Corchorus olitorius HOM05D007319 ORTHO05D008576 3.2e-06 55.5 52 46.2
Migut.H01008 Erythranthe guttata HOM05D007319 ORTHO05D008576 3.2e-06 55.5 52 50.0
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 3.2e-06 55.5 51 51.0
PGR042G3383 Punica granatum HOM05D007319 ORTHO05D008576 3.2e-06 55.5 52 50.0
Glyma.12G104000 Glycine max HOM05D007319 ORTHO05D008576 4.2e-06 55.1 52 46.2
Manes.13G087700 Manihot esculenta HOM05D007319 ORTHO05D008576 4.2e-06 55.1 52 48.1
Sp3g33700 Schrenkiella parvula HOM05D007319 ORTHO05D008576 4.2e-06 55.1 52 48.1
MSTRG.14170 Avicennia marina HOM05D007319 ORTHO05D008576 5.5e-06 54.7 52 51.9
Carub.0001s2595 Capsella rubella HOM05D007319 ORTHO05D008576 5.5e-06 54.7 52 50.0
Cc05_g05710 Coffea canephora HOM05D007319 ORTHO05D008576 5.5e-06 54.7 52 51.9
Eucgr.A01754 Eucalyptus grandis HOM05D007319 ORTHO05D008576 5.5e-06 54.7 52 50.0
Hund01202 Selenicereus undatus HOM05D007319 ORTHO05D008576 7.2e-06 54.3 52 46.2
AT1G27410 Arabidopsis thaliana HOM05D007319 ORTHO05D008576 9.4e-06 53.9 53 50.9
CAN.G640.27 Capsicum annuum HOM05D007319 ORTHO05D008576 9.4e-06 53.9 52 48.1
Potri.013G149650 Populus trichocarpa HOM05D007319 ORTHO05D008576 9.4e-06 53.9 50 48.0


User provided reference genes

Program Settings