Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 2.4e-130 468.8 228 100.0
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 2.6e-108 395.6 228 86.0
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 3.6e-65 252.3 252 54.8
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 1.1e-63 247.3 242 55.4
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 3.3e-63 245.7 235 55.7
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 9.7e-63 244.2 251 53.8
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 2.2e-62 243.0 248 54.4
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 1.1e-61 240.7 202 58.4
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.8e-61 240.0 201 57.2
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 3.1e-61 239.2 235 54.5
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 5.3e-61 238.4 246 52.4
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 1.2e-60 237.3 233 55.4
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.2e-60 237.3 237 54.9
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 2.0e-60 236.5 239 49.4
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 2.0e-60 236.5 233 54.1
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 2.6e-60 236.1 235 52.8
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 3.5e-60 235.7 201 55.2
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 3.5e-60 235.7 203 56.2
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 3.5e-60 235.7 242 51.7
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 3.8e-59 232.3 210 55.7
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.5e-58 230.3 232 51.3
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.9e-58 229.9 200 57.0
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 4.2e-58 228.8 233 54.1
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 5.5e-58 228.4 241 51.5
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 5.5e-58 228.4 232 51.3
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 5.5e-58 228.4 233 55.8
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 7.2e-58 228.0 240 51.7
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.2e-57 227.3 206 55.8
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.2e-57 227.3 239 50.6
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 1.6e-57 226.9 233 51.1
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 1.6e-57 226.9 206 56.8
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 1.6e-57 226.9 241 51.9
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 2.1e-57 226.5 235 51.9
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 2.1e-57 226.5 239 51.9
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 4.7e-57 225.3 239 50.2
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 4.7e-57 225.3 202 56.4
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 6.1e-57 224.9 233 50.6
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 1.8e-56 223.4 235 51.5
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 1.8e-56 223.4 231 52.8
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 2.3e-56 223.0 242 51.2
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.3e-56 223.0 248 52.4
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 2.3e-56 223.0 233 50.2
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 2.3e-56 223.0 239 51.0
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 5.2e-56 221.9 240 50.4
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 5.2e-56 221.9 241 49.8
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 5.2e-56 221.9 238 52.5
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 1.1e-55 220.7 243 52.3
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 1.1e-55 220.7 245 51.4
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.1e-55 220.7 243 50.6
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 1.5e-55 220.3 240 50.8
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 2.0e-55 219.9 240 50.4
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.0e-55 219.9 228 49.6
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 2.6e-55 219.5 205 53.7
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 3.3e-55 219.2 240 50.0
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 3.3e-55 219.2 245 49.4
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 4.4e-55 218.8 237 50.2
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 4.4e-55 218.8 232 50.9
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 5.7e-55 218.4 241 50.2
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 9.7e-55 217.6 222 50.9
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 9.7e-55 217.6 232 50.9
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 1.3e-54 217.2 238 48.7
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.7e-54 216.9 238 48.7
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.7e-54 216.9 238 48.7
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 2.8e-54 216.1 242 48.3
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 2.8e-54 216.1 242 48.3
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 4.8e-54 215.3 244 48.0
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 6.3e-54 214.9 198 54.5
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 6.3e-54 214.9 244 47.5
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.8e-53 213.4 210 51.9
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 3.1e-53 212.6 235 50.6
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 5.3e-53 211.8 239 48.5
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 1.6e-52 210.3 214 51.4
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.6e-52 210.3 230 50.4
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.6e-52 209.5 199 53.8
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 4.5e-52 208.8 231 50.2
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 4.5e-52 208.8 272 47.8
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 1.0e-51 207.6 198 53.5
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 3.2e-50 202.6 234 44.9
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 7.2e-50 201.4 238 48.7
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.6e-49 200.3 197 51.8
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 4.7e-49 198.7 195 49.7
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 3.0e-48 196.1 200 51.5
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 6.8e-48 194.9 230 48.3
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 1.2e-47 194.1 208 47.1
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 1.2e-47 194.1 181 55.2
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 1.2e-47 194.1 147 61.9
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 1.7e-46 190.3 195 50.3
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 3.1e-45 186.0 137 59.9
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 1.0e-43 181.0 249 43.0
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.9e-42 176.8 128 64.1
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 7.5e-39 164.9 132 56.1
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 3.7e-38 162.5 113 68.1
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 7.0e-37 158.3 114 65.8
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 3.5e-36 156.0 165 49.7
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 7.2e-34 148.3 109 61.5
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.6e-33 146.0 109 58.7
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 2.3e-32 143.3 224 38.8
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 1.5e-31 140.6 177 44.6
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.0e-31 140.2 110 61.8
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 1.7e-30 137.1 127 48.8
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 9.2e-29 131.3 93 63.4
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 2.8e-25 119.8 88 64.8
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 5.2e-24 115.5 77 64.9
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.2e-23 114.4 78 62.8
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 1.1e-18 97.8 182 35.7
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.9e-18 97.1 176 32.4
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 5.2e-16 89.0 112 40.2
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 6.4e-14 82.0 71 52.1
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 1.1e-13 81.3 68 52.9
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 1.1e-13 81.3 68 52.9
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 1.2e-12 77.8 120 37.5
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 6.0e-12 75.5 68 54.4
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.3e-11 74.3 59 54.2
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 3.6e-09 66.2 43 62.8
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 3.6e-09 66.2 141 36.9
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 5.8e-07 58.9 134 37.3


User provided reference genes

Program Settings