Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 6.4e-182 640.6 314 100.0
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 1.4e-120 436.8 314 69.7
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 8.4e-57 224.9 344 41.9
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 1.4e-56 224.2 325 42.2
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 1.4e-56 224.2 332 44.0
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.6e-55 220.7 323 42.7
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 8.7e-54 214.9 326 44.5
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.5e-53 214.2 328 42.1
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 9.6e-53 211.5 345 40.0
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 4.8e-52 209.1 329 43.2
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 8.1e-52 208.4 324 42.3
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 8.1e-52 208.4 324 41.7
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 8.1e-52 208.4 321 40.8
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 8.1e-52 208.4 331 42.6
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 1.1e-51 208.0 327 44.6
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 4.0e-51 206.1 334 38.9
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 4.0e-51 206.1 323 40.9
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 2.6e-50 203.4 325 42.2
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 7.6e-50 201.8 345 39.4
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.3e-49 201.1 320 42.2
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.7e-49 200.7 350 38.6
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 1.7e-49 200.7 349 38.7
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 4.9e-49 199.1 319 41.7
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 6.4e-49 198.7 341 38.4
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 6.4e-49 198.7 323 39.6
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.1e-48 198.0 353 38.8
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 2.4e-48 196.8 343 38.5
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 4.2e-48 196.1 327 41.9
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 9.3e-48 194.9 322 41.6
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 2.1e-47 193.7 325 40.6
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 2.7e-47 193.4 328 41.2
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 4.6e-47 192.6 331 38.7
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 6.0e-47 192.2 345 38.3
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 1.0e-46 191.4 361 36.0
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 1.3e-46 191.0 337 42.4
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.3e-46 191.0 320 40.9
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.8e-46 190.7 328 40.5
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.1e-45 188.0 324 41.4
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 2.5e-45 186.8 333 41.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 3.3e-45 186.4 327 39.8
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 4.3e-45 186.0 358 37.2
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 4.3e-45 186.0 206 48.1
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 5.6e-45 185.7 367 36.2
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 2.1e-44 183.7 344 38.7
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 6.2e-44 182.2 326 39.3
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 1.2e-42 177.9 340 39.4
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 4.9e-41 172.6 339 37.2
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 1.1e-40 171.4 336 37.5
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.4e-40 171.0 336 37.5
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 2.5e-40 170.2 311 37.9
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 2.1e-39 167.2 346 37.9
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 3.5e-39 166.4 329 36.8
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 4.6e-39 166.0 318 37.7
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 4.6e-39 166.0 362 34.8
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.0e-38 164.9 357 37.0
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.9e-38 162.9 334 35.9
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 8.7e-38 161.8 331 35.6
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.1e-37 161.4 320 37.8
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.1e-37 161.4 184 47.8
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.5e-37 161.0 303 37.0
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 2.5e-37 160.2 330 36.7
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 2.5e-37 160.2 312 36.5
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 3.3e-37 159.8 339 36.3
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 4.3e-37 159.5 342 37.1
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 5.7e-37 159.1 330 36.7
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 7.4e-37 158.7 372 34.1
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 1.3e-36 157.9 304 36.8
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.8e-36 156.8 340 35.3
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.7e-36 156.4 328 37.2
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.1e-35 154.8 364 35.2
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 1.4e-35 154.5 175 49.1
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 5.3e-35 152.5 260 37.7
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 6.9e-35 152.1 326 37.1
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 9.0e-35 151.8 317 36.9
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 9.0e-35 151.8 324 35.5
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 9.0e-35 151.8 155 49.0
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.2e-34 151.4 334 35.6
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 1.5e-34 151.0 339 34.5
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.0e-34 150.6 342 33.3
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 2.6e-34 150.2 226 39.4
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 3.4e-34 149.8 228 41.7
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 1.0e-33 148.3 312 35.6
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 1.3e-33 147.9 339 33.0
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.3e-33 147.9 345 34.5
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 1.7e-33 147.5 169 47.9
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 1.7e-33 147.5 331 35.6
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 3.8e-33 146.4 157 46.5
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 5.0e-33 146.0 356 32.3
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 5.0e-33 146.0 355 33.2
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 1.9e-32 144.1 332 31.6
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 2.5e-32 143.7 292 37.0
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.5e-32 143.7 340 33.5
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 5.5e-32 142.5 323 35.6
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 5.5e-32 142.5 307 36.8
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 9.3e-32 141.7 292 36.6
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.2e-31 141.4 306 35.0
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.6e-31 139.8 336 32.4
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 7.9e-31 138.7 345 33.3
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.0e-30 138.3 146 50.0
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.3e-30 137.9 246 37.0
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 2.3e-30 137.1 293 35.5
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 2.3e-30 137.1 339 33.0
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 5.1e-30 136.0 239 38.5
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 5.1e-30 136.0 239 38.5
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 6.7e-30 135.6 144 49.3
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 1.5e-29 134.4 126 51.6
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 4.3e-29 132.9 246 37.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 1.3e-28 131.3 148 46.6
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 2.4e-27 127.1 320 35.3
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 5.5e-24 115.9 325 31.7
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 4.6e-23 112.8 159 42.1
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 4.6e-23 112.8 159 42.1
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 8.8e-22 108.6 159 42.1
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 1.3e-20 104.8 162 36.4
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 2.8e-20 103.6 275 34.2
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.1e-19 101.7 176 39.8
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 1.1e-19 101.7 323 30.0
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.9e-16 90.9 260 30.0
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 8.2e-12 75.5 80 48.8
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 2.1e-07 60.8 149 29.5
Lsat_1_v5_gn_6_15121 Lactuca sativa HOM05D000865 ORTHO05D000739 4.7e-07 59.7 190 27.4
SEGI_27303 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 4.7e-07 59.7 149 29.5
Dinv24656 Davidia involucrata HOM05D001109 ORTHO05D001051 8.0e-07 58.9 76 39.5
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 1.0e-06 58.5 117 38.5
Ciclev10033675m.g Citrus clementina HOM05D001109 ORTHO05D001051 1.4e-06 58.2 136 28.7
Cc00_g01750 Coffea canephora HOM05D001109 ORTHO05D001051 1.4e-06 58.2 138 32.6
Psat0s3161g0120 Pisum sativum HOM05D001109 ORTHO05D001051 1.4e-06 58.2 136 29.4
arahy.Tifrunner.gnm1.ann1.FNM63F Arachis hypogaea HOM05D001109 ORTHO05D001051 2.3e-06 57.4 136 30.1
arahy.Tifrunner.gnm1.ann1.M1XP5G Arachis hypogaea HOM05D001109 ORTHO05D001051 2.3e-06 57.4 136 30.1
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 2.3e-06 57.4 93 35.5
TAR626G0715 Trochodendron aralioides HOM05D001109 ORTHO05D001051 2.3e-06 57.4 138 30.4
Hma1.2p1_2093F.1_g313870 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 3.0e-06 57.0 280 26.4
vmacro10380 Vaccinium macrocarpon HOM05D001109 ORTHO05D001051 3.0e-06 57.0 79 35.4
Cfa014787 Carpinus fangiana HOM05D001109 ORTHO05D001051 5.2e-06 56.2 142 28.2
Haze_11464 Corylus avellana HOM05D001109 ORTHO05D001051 5.2e-06 56.2 142 28.2
HPP92_005509 Vanilla planifolia HOM05D001109 ORTHO05D001051 8.8e-06 55.5 79 38.0


User provided reference genes

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