Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb149660 Zea mays HOM05D004711 ORTHO05D005594 1.8e-157 559.7 402 100.0
Zm00001eb368960 Zea mays HOM05D004711 ORTHO05D005594 2.3e-91 340.1 418 67.0
Os01g0819000 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 1.6e-76 290.8 441 53.7
Zm00001eb290760 Zea mays HOM05D004711 ORTHO05D005594 1.7e-62 244.2 439 46.7
Os05g0480600 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 7.9e-60 235.3 451 48.3
Zm00001eb352090 Zea mays HOM05D004711 ORTHO05D005594 9.7e-58 228.4 438 45.4
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.8e-27 127.9 438 32.0
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 8.9e-27 125.6 437 31.8
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.6e-20 104.8 431 29.0
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 2.1e-20 104.4 430 32.6
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 4.7e-20 103.2 429 29.6
HPP92_019048 Vanilla planifolia HOM05D004711 ORTHO05D005594 8.0e-20 102.4 435 34.0
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 2.0e-18 97.8 426 32.2
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 4.4e-18 96.7 430 30.2
DCAR_015327 Daucus carota HOM05D004711 ORTHO05D005594 3.7e-17 93.6 422 32.0
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 8.3e-17 92.4 454 33.7
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 8.3e-17 92.4 434 29.5
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 1.9e-16 91.3 426 33.1
Hund03689 Selenicereus undatus HOM05D004711 ORTHO05D005594 4.1e-16 90.1 431 30.9
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 2.7e-15 87.4 437 32.5
arahy.Tifrunner.gnm1.ann1.C9I5IG Arachis hypogaea HOM05D004711 ORTHO05D005594 4.6e-15 86.7 436 33.0
CsaV3_4G027310 Cucumis sativus L. HOM05D004711 ORTHO05D005594 6.0e-15 86.3 437 33.4
Oeu013178.3 Olea europaea HOM05D004711 ORTHO05D005594 7.8e-15 85.9 435 28.5
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 1.0e-14 85.5 430 27.4
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 1.0e-14 85.5 426 31.7
arahy.Tifrunner.gnm1.ann1.QFH4DU Arachis hypogaea HOM05D004711 ORTHO05D005594 1.7e-14 84.7 435 36.1
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 3.0e-14 84.0 429 34.0
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 3.9e-14 83.6 424 29.0
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 5.0e-14 83.2 431 28.5
Lj1g0020419 Lotus japonicus HOM05D004711 ORTHO05D005594 8.6e-14 82.4 433 30.5
Nn5g26805 Nelumbo nucifera HOM05D004711 ORTHO05D005594 8.6e-14 82.4 431 28.8
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 1.5e-13 81.6 436 28.4
Nitab4.5_0000048g0270 Nicotiana tabacum HOM05D004711 ORTHO05D005594 5.6e-13 79.7 109 48.6
Nitab4.5_0001876g0050 Nicotiana tabacum HOM05D004711 ORTHO05D005594 7.3e-13 79.3 152 46.1
Prupe.6G296400 Prunus persica HOM05D004711 ORTHO05D005594 9.5e-13 79.0 435 34.0
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 1.2e-12 78.6 422 29.9
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 1.2e-12 78.6 426 29.8
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 2.1e-12 77.8 415 33.0
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 2.8e-12 77.4 435 32.9
Oeu026938.1 Olea europaea HOM05D004711 ORTHO05D005594 3.6e-12 77.0 421 28.5
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 8.1e-12 75.9 413 35.1
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 1.1e-11 75.5 429 33.1
Psat3g118000 Pisum sativum HOM05D004711 ORTHO05D005594 1.4e-11 75.1 438 33.1
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 2.3e-11 74.3 430 28.8
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 3.1e-11 73.9 402 28.9
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 3.1e-11 73.9 432 32.9
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 4.0e-11 73.6 427 30.7
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 5.2e-11 73.2 431 27.6
Glyma.16G220600 Glycine max HOM05D004711 ORTHO05D005594 6.8e-11 72.8 420 29.5
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 8.9e-11 72.4 427 30.2
Ah.15g089840 Amaranthus hybridus HOM05D004711 ORTHO05D005594 2.0e-10 71.2 110 46.4
A05p40110 Brassica napus HOM05D004711 ORTHO05D005594 2.6e-10 70.9 434 29.7
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 3.4e-10 70.5 428 28.0
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 4.4e-10 70.1 404 28.0
HanXRQChr01g0000511 Helianthus annuus HOM05D004711 ORTHO05D005594 4.4e-10 70.1 411 34.1
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 5.8e-10 69.7 500 28.4
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 5.8e-10 69.7 427 31.4
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 7.5e-10 69.3 424 31.1
ATR1127G195 Amborella trichopoda HOM05D004711 ORTHO05D005594 9.9e-10 68.9 82 53.7
CDE04G1233 Ceratophyllum demersum HOM05D004711 ORTHO05D005594 1.7e-09 68.2 428 33.6
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 3.7e-09 67.0 403 27.5
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 3.7e-09 67.0 435 30.1
Aqoxy4G03297 Aquilegia oxysepala HOM05D004711 ORTHO05D005594 4.9e-09 66.6 434 32.5
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 4.9e-09 66.6 427 27.2
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 8.3e-09 65.9 110 40.9
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 8.3e-09 65.9 441 34.9
Sed0008721 Sechium edule HOM05D004711 ORTHO05D005594 8.3e-09 65.9 451 30.4
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 1.9e-08 64.7 90 45.6
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 3.2e-08 63.9 437 30.9
Dinv25360 Davidia involucrata HOM05D004711 ORTHO05D005594 3.2e-08 63.9 430 33.7
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 4.1e-08 63.5 427 25.5
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 4.1e-08 63.5 426 32.2
Actinidia29018 Actinidia chinensis HOM05D004711 ORTHO05D005594 7.1e-08 62.8 425 25.4
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 7.1e-08 62.8 430 30.5
BcaB04g18579 Brassica carinata HOM05D004711 ORTHO05D005594 7.1e-08 62.8 191 33.0
PSO384G0846 Papaver somniferum HOM05D004711 ORTHO05D005594 7.1e-08 62.8 424 30.9
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 7.1e-08 62.8 81 48.1
Lj2C57T4 Lonicera japonica HOM05D004711 ORTHO05D005594 9.2e-08 62.4 411 26.3
Potri.016G139500 Populus trichocarpa HOM05D004711 ORTHO05D005594 9.2e-08 62.4 428 31.8
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 1.6e-07 61.6 429 34.3
RcHm_v2.0_Chr3g0460111 Rosa chinensis HOM05D004711 ORTHO05D005594 2.1e-07 61.2 427 32.6
ECA248G3895 Erigeron canadensis HOM05D001126 ORTHO05D000991 2.7e-07 60.8 432 29.2
AUR62006439 Chenopodium quinoa HOM05D004711 ORTHO05D005594 3.5e-07 60.5 88 43.2
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 3.5e-07 60.5 428 32.7
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 6.0e-07 59.7 81 49.4
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 7.8e-07 59.3 429 28.7
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 7.8e-07 59.3 428 35.3
VMungo0331G0284 Vigna mungo HOM05D004711 ORTHO05D005594 7.8e-07 59.3 105 41.9
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 1.3e-06 58.5 138 35.5
Nn2g10244 Nelumbo nucifera HOM05D004711 ORTHO05D005594 1.3e-06 58.5 425 30.6
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 1.7e-06 58.2 67 44.8
unitig_22.g6618 Utricularia gibba HOM05D004711 ORTHO05D005594 1.7e-06 58.2 107 41.1
Glyma.03G001700 Glycine max HOM05D004711 ORTHO05D005594 3.0e-06 57.4 181 34.8
PSO339G1855 Papaver somniferum HOM05D004711 ORTHO05D005594 3.0e-06 57.4 415 29.6
Sc20g0007170 Simmondsia chinensis HOM05D004711 ORTHO05D005594 3.0e-06 57.4 94 40.4
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 3.0e-06 57.4 79 50.6
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 3.9e-06 57.0 128 33.6
AUR62029794 Chenopodium quinoa HOM05D004711 ORTHO05D005594 5.1e-06 56.6 80 43.8
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 6.6e-06 56.2 428 29.2
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 6.6e-06 56.2 74 41.9
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 6.6e-06 56.2 74 41.9


User provided reference genes

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