Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 6.4e-145 517.7 320 100.0
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 1.4e-120 436.8 321 84.7
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 2.4e-107 392.9 322 79.2
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 9.1e-67 258.1 328 56.1
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 2.0e-66 256.9 330 55.8
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 8.0e-63 245.0 329 54.4
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 2.3e-62 243.4 324 53.1
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 6.8e-62 241.9 327 53.5
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 8.8e-62 241.5 329 54.1
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.6e-61 240.0 330 54.2
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 2.6e-61 240.0 323 57.6
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 7.5e-61 238.4 321 52.6
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.3e-60 237.7 322 52.5
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 1.7e-60 237.3 324 54.9
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 2.2e-60 236.9 324 53.7
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 2.2e-60 236.9 322 53.1
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.8e-60 236.5 321 53.6
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 2.8e-60 236.5 319 54.2
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 4.8e-60 235.7 320 53.1
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 6.3e-60 235.3 321 53.6
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 8.3e-60 235.0 330 55.5
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.1e-59 234.6 330 55.8
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 1.8e-59 233.8 323 57.9
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 2.4e-59 233.4 322 53.1
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 2.4e-59 233.4 327 53.5
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.4e-59 232.3 247 56.3
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 5.4e-59 232.3 327 53.8
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 7.0e-59 231.9 321 51.4
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.7e-58 229.9 321 53.9
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 7.7e-58 228.4 328 53.4
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.3e-57 227.6 320 54.1
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.7e-57 227.3 323 53.3
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.9e-57 226.5 318 54.4
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 5.0e-57 225.7 336 47.6
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 6.5e-57 225.3 323 51.4
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 6.5e-57 225.3 326 50.9
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 8.6e-57 224.9 327 52.6
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 8.6e-57 224.9 335 47.2
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 8.6e-57 224.9 319 51.7
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 1.5e-56 224.2 329 54.7
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 1.9e-56 223.8 331 52.3
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.5e-56 223.4 248 56.9
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 4.2e-56 222.6 326 51.8
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 4.2e-56 222.6 320 54.1
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 7.2e-56 221.9 322 50.3
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 9.5e-56 221.5 322 51.2
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 1.2e-55 221.1 327 53.5
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.6e-55 220.7 324 50.0
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 2.1e-55 220.3 327 52.0
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 2.8e-55 219.9 325 54.5
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.8e-55 219.9 321 53.3
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 3.6e-55 219.5 318 50.6
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 6.1e-55 218.8 319 49.8
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 8.0e-55 218.4 326 51.5
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 1.8e-54 217.2 324 51.2
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 1.8e-54 217.2 324 51.2
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 3.0e-54 216.5 329 52.3
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 4.0e-54 216.1 326 47.9
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 5.2e-54 215.7 321 50.8
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 5.2e-54 215.7 326 48.2
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 1.2e-53 214.5 323 50.8
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 1.5e-53 214.2 325 51.4
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 3.4e-53 213.0 236 55.5
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 3.4e-53 213.0 330 50.3
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 2.2e-52 210.3 327 49.8
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 2.2e-52 210.3 329 49.5
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 2.8e-52 209.9 322 49.1
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 2.8e-52 209.9 327 51.4
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 4.9e-52 209.1 241 53.1
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 4.9e-52 209.1 321 52.3
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 4.9e-52 209.1 327 49.2
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.3e-52 208.4 323 48.9
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 2.4e-51 206.8 325 50.8
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 2.4e-51 206.8 340 47.6
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 2.4e-51 206.8 327 49.2
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 2.4e-51 206.8 327 51.4
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 4.1e-51 206.1 325 51.1
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 7.0e-51 205.3 330 49.1
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 7.0e-51 205.3 325 51.7
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 7.0e-51 205.3 320 49.4
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.2e-50 204.5 329 49.2
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 2.0e-50 203.8 339 45.1
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.0e-50 203.8 326 51.5
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.0e-50 203.8 330 53.9
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 3.5e-50 203.0 321 50.2
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 4.5e-50 202.6 357 48.2
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 5.9e-50 202.2 324 49.1
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 7.8e-50 201.8 323 50.2
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 1.7e-49 200.7 325 47.1
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.3e-49 200.3 325 52.9
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 8.6e-49 198.4 329 43.8
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.1e-48 198.0 324 49.4
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 1.9e-48 197.2 357 46.2
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 4.3e-48 196.1 326 49.7
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 5.6e-48 195.7 326 50.3
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 7.3e-48 195.3 326 50.0
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 7.3e-48 195.3 326 49.4
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 3.6e-47 193.0 326 50.3
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 3.6e-47 193.0 326 49.7
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 3.6e-47 193.0 325 49.8
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 4.7e-47 192.6 327 49.8
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 4.7e-47 192.6 329 48.6
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 6.1e-47 192.2 332 49.1
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 6.1e-47 192.2 383 45.2
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 1.4e-46 191.0 326 49.4
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.4e-46 191.0 325 49.5
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 2.3e-46 190.3 325 49.2
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 2.3e-46 190.3 326 48.8
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 5.2e-46 189.1 322 52.5
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 8.9e-46 188.3 325 48.9
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 8.9e-46 188.3 326 48.8
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 1.2e-45 188.0 320 51.6
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 1.5e-45 187.6 332 48.8
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 3.4e-45 186.4 323 48.6
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 7.5e-45 185.3 320 51.2
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 1.7e-44 184.1 323 49.8
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 3.7e-44 183.0 320 46.9
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.2e-43 179.9 336 46.4
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 5.4e-43 179.1 331 50.2
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 2.5e-40 170.2 329 45.0
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 8.0e-39 165.2 320 43.1
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 1.2e-37 161.4 237 46.4
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 2.9e-36 156.8 238 45.4
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 1.7e-33 147.5 237 44.3
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 1.1e-32 144.8 165 52.7
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 3.3e-32 143.3 318 48.7
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 5.6e-32 142.5 227 43.6
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 2.3e-30 137.1 342 37.4
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 3.1e-30 136.7 320 42.2
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 6.8e-30 135.6 357 40.3
Psat4g220880 Pisum sativum HOM05D003369 ORTHO05D004089 2.9e-28 130.2 102 63.7
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 8.3e-28 128.6 120 62.5
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 4.6e-26 122.9 257 37.7
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 1.0e-25 121.7 129 55.8
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 3.9e-25 119.8 258 49.6
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 5.6e-24 115.9 244 52.9
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 6.2e-23 112.5 187 49.2
DCAR_005879 Daucus carota HOM05D003369 ORTHO05D004089 8.1e-23 112.1 89 65.2
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 1.1e-22 111.7 247 36.8
Lsat_1_v5_gn_2_20300 Lactuca sativa HOM05D003369 ORTHO05D004089 5.2e-22 109.4 147 44.2
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 5.2e-22 109.4 189 54.0
Cpa.g.sc19.46 Carica papaya HOM05D003369 ORTHO05D004089 9.9e-21 105.1 80 67.5
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.7e-20 104.4 256 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1623 Anthoceros agrestis HOM05D003369 ORTHO05D004089 3.2e-19 100.1 220 37.3
Psat0s4462g0200 Pisum sativum HOM05D003369 ORTHO05D004089 1.7e-17 94.4 68 70.6
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 4.7e-15 86.3 211 47.4
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 3.1e-14 83.6 238 35.7
CBR_g756 Chara braunii HOM05D000486 ORTHO05D004089 5.2e-14 82.8 195 33.8
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 6.9e-14 82.4 136 47.1
CBR_g49707 Chara braunii HOM05D003369 ORTHO05D004089 9.0e-14 82.0 193 36.3
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 1.3e-12 78.2 211 41.7
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.7e-12 77.8 111 47.7
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 7.8e-10 68.9 119 41.2
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.3e-09 67.4 75 54.7
CSS0000037 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D020257 6.9e-06 55.8 109 52.3


User provided reference genes

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