Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.8e-221 771.9 479 100.0
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.5e-110 404.1 329 67.5
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.1e-67 260.8 344 48.8
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.4e-41 173.3 310 45.5
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 2.3e-37 161.0 310 39.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.5e-36 158.3 330 39.4
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 3.3e-36 157.1 307 39.7
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 5.6e-36 156.4 317 39.7
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 4.7e-35 153.3 283 41.3
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 6.8e-34 149.4 346 39.0
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 6.8e-34 149.4 317 39.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 1.5e-33 148.3 329 37.7
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 2.6e-33 147.5 326 36.8
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 2.6e-33 147.5 339 38.1
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 3.4e-33 147.1 325 36.9
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.6e-33 146.0 293 41.6
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.3e-32 145.2 302 40.7
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.7e-32 144.8 332 38.3
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.4e-31 141.7 331 36.3
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.9e-31 141.4 322 39.1
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.4e-31 141.0 302 37.7
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 9.2e-31 139.0 372 34.4
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.6e-30 138.3 326 39.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.0e-30 136.3 342 36.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 7.8e-30 136.0 334 36.8
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-29 135.2 321 35.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-29 135.2 311 36.3
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.7e-29 134.8 331 37.2
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.3e-29 134.4 336 36.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.0e-29 134.0 340 37.4
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 3.9e-29 133.7 342 36.0
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 3.9e-29 133.7 341 38.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 8.6e-29 132.5 333 37.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 8.6e-29 132.5 349 35.0
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 1.1e-28 132.1 329 38.6
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.1e-28 132.1 348 36.5
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.5e-28 131.0 317 37.2
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.5e-28 131.0 341 37.5
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 2.5e-28 131.0 316 36.1
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 3.3e-28 130.6 321 38.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 3.3e-28 130.6 329 37.1
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 7.3e-28 129.4 306 35.9
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 9.6e-28 129.0 263 40.3
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 9.6e-28 129.0 310 37.4
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.6e-27 128.3 318 37.7
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.6e-27 128.3 274 37.6
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.1e-27 127.9 334 37.1
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.8e-27 127.5 331 36.9
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.8e-27 127.5 339 36.3
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 3.6e-27 127.1 341 34.9
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 4.7e-27 126.7 352 35.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 6.2e-27 126.3 320 37.8
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.2e-27 126.3 340 35.9
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 8.1e-27 125.9 332 36.4
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 8.1e-27 125.9 347 36.9
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 8.1e-27 125.9 310 37.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.1e-26 125.6 342 35.1
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.1e-26 125.6 326 36.8
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.4e-26 124.4 303 36.0
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 3.1e-26 124.0 334 35.6
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.0e-26 123.6 325 38.2
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 4.0e-26 123.6 315 36.8
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.2e-26 123.2 326 37.1
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.2e-25 122.1 261 40.2
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 5.8e-25 119.8 332 35.5
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 9.9e-25 119.0 345 36.2
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.3e-24 118.6 319 35.1
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.3e-24 118.6 344 34.0
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 1.7e-24 118.2 310 35.8
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.7e-24 118.2 310 35.5
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 2.2e-24 117.9 320 35.6
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 2.2e-24 117.9 320 35.6
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.4e-23 114.4 337 35.0
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 2.4e-23 114.4 316 35.8
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 1.6e-22 111.7 334 32.9
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.7e-22 110.9 262 36.6
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 4.6e-22 110.2 311 34.7
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 6.0e-22 109.8 265 38.1
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 6.0e-22 109.8 316 34.8
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 7.8e-22 109.4 303 37.6
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.0e-21 109.0 316 35.4
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.0e-21 107.5 308 34.7
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 3.0e-21 107.5 307 34.2
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.9e-21 107.1 259 35.9
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.9e-21 107.1 312 33.0
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 3.9e-21 107.1 191 40.3
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 6.6e-21 106.3 263 37.3
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.1e-20 105.5 251 37.5
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.5e-20 105.1 267 36.0
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.3e-20 104.0 330 33.9
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 9.6e-20 102.4 276 34.1
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.1e-19 101.3 285 35.4
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.8e-19 100.9 128 48.4
Zm00001eb375540 Zea mays HOM05D041583 ORTHO05D006563 6.2e-19 99.8 62 96.8
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 1.4e-18 98.6 170 42.4
Zm00001eb429780 Zea mays HOM05D041583 ORTHO05D006563 2.0e-17 94.7 158 90.5
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 4.5e-17 93.6 327 32.4
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 7.6e-17 92.8 292 31.5
Zm00001eb031960 Zea mays HOM05D041583 ORTHO05D006563 9.9e-17 92.4 157 81.5
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.3e-16 92.0 326 33.4
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.7e-16 91.7 395 28.9
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.7e-16 91.7 334 32.9
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 2.9e-16 90.9 178 35.4
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.9e-16 90.9 362 32.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 8.4e-16 89.4 315 32.4
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.1e-15 89.0 325 35.4
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 1.4e-15 88.6 330 31.8
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.4e-15 88.6 331 30.5
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.9e-15 88.2 386 32.6
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 3.2e-15 87.4 363 31.4
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 4.2e-15 87.0 288 33.0
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 5.4e-15 86.7 340 31.5
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 7.1e-15 86.3 322 32.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 9.3e-15 85.9 317 31.2
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.6e-14 85.1 326 31.9
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 3.0e-13 80.9 340 31.2
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 3.9e-13 80.5 313 32.3
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 5.1e-13 80.1 223 32.3
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.1e-12 79.0 281 31.7
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 5.6e-12 76.6 231 34.6
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 6.2e-11 73.2 117 39.3
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.4e-10 72.0 350 28.6
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 2.4e-10 71.2 122 41.0
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 4.0e-10 70.5 245 33.9
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 5.8e-09 66.6 57 57.9
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 8.4e-08 62.8 173 33.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.4e-07 62.0 268 31.0
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 3.2e-07 60.8 220 32.7
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.1e-06 58.2 295 28.1
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 7.9e-06 56.2 278 28.1
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 7.9e-06 56.2 278 28.1


User provided reference genes

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